General microbiome
[REVIEW]Host specificity of the gut microbiome – Mallott & Amato – Nature Reviews Microbiology
[COMMENT]Harnessing the power of host–microbe symbioses to address grand challenges – Hentschel – Nature Reviews Microbiology
The intratumoral microbiome: Characterization methods and functional impact – Heymann et al. – Cancer Letters
Human oral microbiome
Oral hygiene and oral microbiota in children and young people with neurological impairment and oropharyngeal dysphagia – Fregatto et al. – Scientific Reports
Human skin microbiome/virome
[PREPRINT]The Application of The Skin Virome for Human Identification – Graham et al. – bioRxiv
Human vaginal microbiome
Vaginal microbiome topic modeling of laboring Ugandan women with and without fever – Movassagh et al. – NPJ Biofilms and Microbes
Human nearly-sterile sites (blood, organs, brain)
Plasma metagenomic sequencing to detect and quantify bacterial DNA in ICU patients suspected of sepsis – Kisat et al. – The Journal of Trauma and Acute Care Surgery
Human gut microbiome
The gut microbiome in konzo – Bramble et al. – Nature Communications
High-salt diet mediates interplay between NK cells and gut microbiota to induce potent tumor immunity – Rizvi et al. – Science Advances
The Firmicutes/Bacteroidetes ratio of the human gut microbiota is associated with prostate enlargement – Takezawa et al. – The Prostate
Animal experiments (mouse/rat experiments, chickens/pigs on different diets)
Gut microbiota from green tea polyphenol-dosed mice improves intestinal epithelial homeostasis and ameliorates experimental colitis – Wu et a. – Microbiome
Differential perturbations of gut microbial profiles and co-occurrence networks among phases of methamphetamine-induced conditioned place preference – Wang et al. – Journal of Neuroscience Research
Gut microbiota regulation of P-glycoprotein in the intestinal epithelium in maintenance of homeostasis – Foley et al. – Microbiome
Vitamin A supplementation ameliorates ulcerative colitis in gut microbiota–dependent manner – Pang et al. – Food Research International
Dynamics of the fecal microbiome and antimicrobial resistome in commercial piglets during the weaning period – Suriyaphol et al. – Scientific Reports
Bioinformatics
A statistical model for describing and simulating microbial community profiles – Ma et al. – PLOS Computational Biology