General microbiome

Microbial diversity in homes and the risk of allergic rhinitis and inhalant atopy in two European birth cohorts – Hyytiäinen et al. – Environmental Research

Pregnancy and early life

Can we modulate the breastfed infant gut microbiota through maternal diet? – Sindi et al. – FEMS Microbiology Reviews

Human respiratory microbiome

The nasal microbiome, nasal transcriptome, and pet sensitization – Chun et al. – Journal of Allergy and Clinical Immunology

Human gut microbiome

The Effects of Genetic Relatedness on the Preterm Infant Gut Microbiota – Lim et al. – Microorganisms

[REVIEW]Inflammatory bowel disease: tri-directional relationship between microbiota, immune system and intestinal epithelium – Ahlawat et al. – Critical Reviews in Microbiology

Fecal Microbiota Transplantation Is a Promising Method to Restore Gut Microbiota Dysbiosis and Relieve Neurological Deficits after Traumatic Brain Injury – Du et al. – Oxidative Medicine and Cellular Longevity

The baseline gut microbiota directs dieting-induced weight loss trajectories – Jie et al. – Gastroenterology

Animal microbiome (for animals in the wild)

Bacterial microbiota similarity between predators and prey in a blue tit trophic network – Dion-Phenix et al. The ISME Journal

Water and extremophile microbiome (sea, rivers, lakes, glaciers, permafrost, high-salt)

Landscape Setting Drives the Microbial Eukaryotic Community Structure in Four Swedish Mountain Lakes over the Holocene – Capo et al. – Microorganisms

Profiling of Microbial Communities in the Sediments of Jinsha River Watershed Exposed to Different Levels of Impacts by the Vanadium Industry, Panzhihua, China – He et al. – Environmental Microbiology

Bioinformatics

HMD-ARG: hierarchical multi-task deep learning for annotating antibiotic resistance genes – Li et al. – Microbiome

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework – Mehta et al. – f1000