Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer – Costa et al. – Microbiome
Review – Host–microbiota interactions in immune-mediated diseases. Ruff et al. – Nature Reviews Microbiology
Human gut microbiome
Review – Interaction between drugs and the gut microbiome – Weersma et al. – Gut
The Gut Microbiota Communities of Wild Arboreal and Ground-Feeding Tropical Primates Are Affected Differently by Habitat Disturbance – Barelli et al. mSystems.
Plant, root and soil microbiome
Diversity of isoprene-degrading bacteria in phyllosphere and soil communities from a high isoprene-emitting environment: a Malaysian oil palm plantation – Carrion et al. Microbiome
Phages and viruses
Predicting host taxonomic information from viral genomes: A comparison of feature representations – Young et al. PLOS Comp Biology.
Freshwater viral metagenome reveals novel and functional phage-borne antibiotic resistance genes – Moon et al. Microbiome.
The hidden layers of microbial community structure: extracting the concealed diversity dimensions from our sequencing data – Fasolo et al. – FEMS Microbiology Letters
Compositional Lotka-Volterra describes microbial dynamics in the simplex – Joseph et al. PLOS Computational Biology.
Prokaryotic single-cell RNA sequencing by in situ combinatorial indexing – Blattman et al. – Nature Microbiology.