Today’s digest features a study on the fecal microbiota transplantation and obesity, a comprehensive overview of the diversity and abundance of antibiotic resistance genes in migratory birds, and more. Happy reading!
Gut microbiome
*Fecal microbiota transplantation for the improvement of metabolism in obesity: The FMT-TRIM double-blind placebo-controlled pilot trial – Elaine W. Yu – PlosMedicine
Diet influences the functions of the human intestinal microbiome – Maria De Angelis — Scientific Reports
Bacillus coagulans SANK 70258 suppresses Enterobacteriaceae in the microbiota of ulcerative colitis in vitro and enhances butyrogenesis in healthy microbiota – Kengo Sasaki – Applied Microbiology and Biotechnology
Mini review: Gut epithelial metabolism as a key driver of intestinal dysbiosis associated with noncommunicable diseases – Catherine D. Shelton and Mariana X. Byndloss – Infection and Immunity
Etiologic features of diarrheagenic microbes in stool specimens from patients with acute diarrhea in Thailand – Kazuhisa Okad – Scientific reports
Raman‐activated sorting of antibiotic‐resistant bacteria in human gut microbiota – Yi Wang – Environmental Microbiology
Animal microbiome
*Metagenomic analysis reveals the microbiome and resistome in migratory birds – Jian Cao – Microbiome
Lack of evidence for microbiota in the placental and fetal tissues of rhesus macaques – Kevin R. Theis – bioRxiv
Animal experiment
Diarrhoeal events can trigger long-term Clostridium difficile colonization with recurrent blooms – David VanInsberghe – Nature Microbiology
Plant/root/soil microbiome
Long-Term Phytoremediation of Coastal Saline Soil Reveals Plant Species-Specific Patterns of Microbial Community Recruitment – Xiaogai Wang – mSystems
Impact of Soil Microbial Amendments on Tomato Rhizosphere Microbiome and Plant Growth in Field Soil – Andrea Nuzzo – Microbial Ecology
Bioinformatics
DeepMAsED: Evaluating the quality of metagenomic assemblies– Olga Mineeva – Bioinformatics
A method for achieving complete microbial genomes and better quality bins from metagenomics data – Lauren M. Lui – bioRxiv
Estimating relative biomasses of organisms in microbiota using “phylopeptidomics” – Olivier Pible – Microbiome