March 13, 2020

Good moring y’all!

Today’s digest is relatively short, but rather diverse- from the potential characteristics of scientific tweets readers, through cancer microbiome and horses fecal transplants, as well as endophytes microbiomes in different biomes and plants. Also, if you’re still unfaimilar with the ‘Talking about Biotech’ podcast (by Kevin Folta), I highly recommend to add it to your list. The latest episode talks, of course, about the Corona outbreak, and if you’ll go a bit earlier you will find plenty interesring and insightful episodes.

And lastly- pls stay safe! in Israel, as in other parts of the world, conferences are being cancelled, group meetings are rescheduled and we were highly encouraged to work from home (go bioinformatics!). Remember- there is not a single experiment that is more important than your and your love ones health.

General microbiology

Quantifying and contextualizing the impact of bioRxiv preprints through social media audience segmentation, Jedidiah Carlson , bioRxiv

An optimised saliva collection method to produce high-yield, high-quality RNA for translational research, Roisin Sullivan, PLOS ONE

The Vibrio cholerae Type VI Secretion System: Toxins, Regulators and Consequences, Cristian V. Crisan, Env. Micro.

Human microbiome

Microbiome analyses of blood and tissues suggest cancer diagnostic approach, Gregory D. Poore , Nature

Changes in key vaginal bacteria among postpartum African women initiating intramuscular depot-medroxyprogesterone acetate, Bridget M. Whitney ,PLOS ONE

Animal microbiome

The fecal microbiota of healthy donor horses and geriatric recipients undergoing fecal microbial transplantation for the treatment of diarrhea, Caroline A. McKinney , PLOS ONE

Low mutational load and high mutation rate variation in gut commensal bacteria, Ricardo S. Ramiro, PLOS Biology

Marine microbiome

Diel, daily, and spatial variation of coral reef seawater microbial communities, Laura Weber , PLOS ONE

Short‐term changes in polysaccharide utilization mechanisms of marine bacterioplankton during a spring phytoplankton bloom, Greta Reintjes, Env. Micro.

Plant and Soil microbiome

The diversity and distribution of endophytes across biomes, plant phylogeny, and host tissues—how far have we come and where do we go from here?, Joshua G. Garrison, Env. Micro.

Tissue age, orchard location and disease management influence the composition of fungal and bacterial communities present on the bark of apple trees, Elena Arrigoni , Env. Micro.

Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms, Jasper Schierstaedt , Env. Micro.

Bioinformatics

Random sampling in metagenomic sequencing leads to overestimated spatial scaling of microbial diversity, Qichao Tu , Env. Micro.

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