Events and jobs
Postdoctoral Fellow – Institute of Genome Sciences (IGS) with Hotopp Lab – Baltimore, Maryland
Pregnancy and early life
Influence of vitamin D on key bacterial taxa in infant microbiota in the KOALA Birth Cohort Study – Chris E. Talsness – PLoS One
Review: Role of the Human Breast Milk-Associated Microbiota on the Newborns’ Immune System: A Mini Review – Marco Toscano – Frontiers in Microbiology
Review: The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota – Christian Milani – Microbiology and Molecular Biology Reviews
Multi-site human microbiome
Segmented Filamentous Bacteria Provoke Lung Autoimmunity by Inducing Gut-Lung Axis Th17 Cells Expressing Dual TCRs – C. Pierce Bradley – Cell Host and Microbe
Human vaginal microbiome
Genitourinary Syndrome of the Menopause: Vaginal Health and Microbiota – Maria Jesús Cancelo-Hidalgo – Menopause
Human gut microbiome
Review: Microbial biotransformations in the human distal gut – Elisabeth M Bik – British Journal of Pharmacology
Review: The Human Microbiome and Obesity: Moving beyond Associations – Padma Maruvada – Cell Host and Microbe
A Microbiomic Analysis in African Americans with Colonic Lesions Reveals Streptococcus sp.VT162 as a Marker of Neoplastic Transformation – Hassan Brim – Genes
Multiple articles from Frontiers in Immunology:
LC3-Associated Phagocytosis Is Required for Dendritic Cell Inflammatory Cytokine Response to Gut Commensal Yeast Saccharomyces cerevisiae – Dimitra Lamprinaki – Frontiers in Immunology
Immunological and Clinical Effect of Diet Modulation of the Gut Microbiome in Multiple Sclerosis Patients: A Pilot Study – Marina Saresella – Frontiers in Immunology
Review: TH17 Cell and Epithelial Cell Crosstalk during Inflammatory Bowel Disease and Carcinogenesis – Jan Kempski – Frontiers in Immunology
Animal experiments
Difference in the gut microbiome between ovariectomy-induced obesity and diet-induced obesity – S. Choi – Journal of Microbiology and Biotechnology
No link available yet, linked to PubMed.
The effects of starter microbiota and the early life feeding of medium chain triglycerides on the gastric transcriptome profile of 2- or 3-week-old cesarean delivered piglets – Paolo Trevisi – Journal of Animal Science and Biotechnology
Animal microbiome
Prodigiosin, Violacein, and Volatile Organic Compounds Produced by Widespread Cutaneous Bacteria of Amphibians Can Inhibit Two Batrachochytrium Fungal Pathogens – Douglas C. Woodhams – Microbial Ecology
Accessing the Hidden Microbial Diversity of Aphids: an Illustration of How Culture-Dependent Methods Can Be Used to Decipher the Insect Microbiota – Alina S. Grigorescu – Microbial Ecology
Diversity and characterization of bacteria associated with the deep-sea hydrothermal vent crab Austinograea sp. comparing with those of two shallow-water crabs by 16S ribosomal DNA analysis – Na Zhang – PLoS One
Diets Alter the Gut Microbiome of Crocodile Lizards – Hai-Ying Jiang – Frontiers in Microbiology
Plant, root, and soil microbiome
Opinion: Nitrogen limitation of decomposition and decay: how can it occur? – Colin Averill – Global Change Biology
Compatible bacterial mixture, tolerant to desiccation, improves maize plant growth – Dalia Molina-Romero – PLoS One
Effects of root pruning on the physicochemical properties and microbial activities of poplar rhizosphere soil – Da-Wei Jing – PLoS One
Biochar amendment changes temperature sensitivity of soil respiration and composition of microbial communities 3 years after incorporation in an organic carbon-poor dry cropland soil – Junhui Chen – Biology and Fertility of Soils
Book of interest: Endophytes: Biology and Biotechnology – Dinesh K. Maheshwari
Biosynthetic potential of actinomycetes in brown forest soil on the eastern coast of the aegean sea – I. G. Shirokikh – Eurasian Soil Science
Water and extremophile microbiome
Editorial: Deep Carbon in Earth: Early Career Scientist Contributions to the Deep Carbon Observatory – Donato Giovannelli – Frontiers in Earth Science
Spatial variability of marine bacterial and archaeal communities along the particulate matter continuum – Mireia Mestre – Molecular Ecology
Cyanobacteria and Alphaproteobacteria May Facilitate Cooperative Interactions in Niche Communities – Marc W. Van Goethem – Frontiers in Microbiology
Influences of anthropogenic land use on microbial community structure and functional potentials of stream benthic biofilms – Xiaodong Qu – Scientific Reports
Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea – Bernd Wemheuer – Microorganisms
Biohydrogen production at pH below 3.0: Is it possible? – V.T. Mota – Water Research
Groundwater Microbial Communities Along a Generalized Flowpath in Nomhon Area, Qaidam Basin, China – Y Sheng – Ground Water
No link available yet, linked to PubMed.
Targeted metatranscriptomics of compost-derived consortia reveals a GH11 exerting an unusual exo-1,4-β-xylanase activity – Bruno L. Mello – Biotechnology for Biofuels
Environmental factors shaping the archaeal community structure and ether lipid distribution in a subtropic river and estuary, China – Wenting Guo – Applied Microbiology and Biotechnology
Built environment
The Nosocomial Risk of Bacterial Contamination of Surgical Wards at Saint Francis Hospital in Katete District of Zambia – Frank Mtonga – ARC Journal of Clinical Case Reports
Food microbiology
Preventive effects of a probiotic mixture in an ovalbumin-induced food allergy model – HS Shin -Journal of Microbiology and Biotechnology
No link available yet, linked to PubMed.
Digestion under saliva, simulated gastric and small intestinal conditions and fermentation in vitro by human intestinal microbiota of polysaccharides from Fuzhuan brick tea – Guijie Chen – Food Chemistry
Phages and viruses
Several book chapters from Bacteriophage Therapy:
Book Section: Methods for Bacteriophage Preservation – Małgorzata B. Łobocka
Interaction of Bacteriophages with Mammalian Cells – Zuzanna Kaźmierczak
Perspective: The Intra-Dependence of Viruses and the Holobiont – Juris A. Grasis – Frontiers in Immunology
Bioinformatics
Metagenome sequence clustering with hash-based canopies – Mohammad Arifur Rahman – Journal of Bioinformatics and Computational Biology
Book: UNIT 1E.14 Computational Methods for Human Microbiome Analysis – Matthieu J. Miossec – Current Protocols in Microbiology
Microbes in the news
Enhanced understanding of the microbiome is helping medicine – The Economist
Microbes on the market
Seres Therapeutics to Participate in Three Upcoming November Conferences – Business Wire
Global Microbiome Sequencing Services Market Outlook 2017 Growth, Trends, Forecasts 2022 – Samuel – Talk Daily News
Space travel changes gut bacteria in mice – Science Nordic
New model reveals possibility of pumping antibiotics into bacteria – Phys Org
Paper: New free-exchange model of EmrE transport – Anne E. Robinson – PNAS
EPA approves bacteria-infected insects to kill mosquitoes – Bonnie Burton – CNET
Bacteria Hysteria
Deadly bacterial infections could be coming from your kitchen sink PLUGHOLE – Matt Atherton – Express
Science, publishing, and career
The GOP tax bill could be a disaster for PhD students – Jen Kirby – Vox