Quite short Microbiome Digest today with plastic degrading microbes in news, while highlighted paper is about engineered bacteria. Enjoy your reading!
Events and jobs
Bioinformatics Research Associate, JDRF bioinformatics center, Harvard
General microbiome
Effect of meteorological factors and geographic location on methicillin-resistant Staphylococcus aureus and vancomycin-resistant enterococci colonization in the US – Natalia Blanco – PLOS One
Surface-attached molecules control Staphylococcus aureus quorum sensing and biofilm development – Minyoung Kevin Kim – Nature Microbiology
Human respiratory microbiome
A pilot study using metagenomic sequencing of the sputum microbiome suggests potential bacterial biomarkers for lung cancer – Simon J. S. Cameron – PLOS One
Human gut microbiome
Review: Screening and treating Helicobacter pylori infection for gastric cancer prevention on the population level – Yi-Chia Lee – Journal of Gastroenterology and Hepatology
Impact of maintenance immunosuppressive therapy on the fecal microbiome of renal transplant recipients: Comparison between an everolimus- and a standard tacrolimus-based regimen – Gianluigi Zaza – PLOS One
Animal microbiome
The microbiota of diapause: how host-microbe associations are formed after dormancy in an aquatic crustacean – Alexandra A. Mushegian – Animal Ecology
Water and extremophile microbiome
The Variable Influence of Dispersant on Degradation of Oil Hydrocarbons in Subarctic Deep-Sea Sediments at Low Temperatures (0–5°C) – Robert M. W. Ferguson – Scientific Reports
Metatranscriptomic analysis of prokaryotic communities active in sulfur and arsenic cycling in Mono Lake, California, USA – Christian F Edwardson – ISME Journal
Microbial biotechnology
Engineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation – David T Riglar – Nature Biotechnology
Microbes in space
Traces of Barents Sea plankton, bacteria from Madagascar found on ISS surface
Techniques
ToNER: A tool for identifying nucleotide enrichment signals in feature-enriched RNA-seq data – Yuttachon Promworn – PLOS One
ANNOgesic: A Pipeline To Translate Bacterial/Archaeal RNA-Seq Data Into High-Resolution Genome Annotations – Sung-Huan Yu – bioRxiv
Microbes in the news
Super-Charged Antibiotic Could Stop Resistant Bacteria For Years
Newly-Evolved Microbes Could Be Eating 90% of Ocean Plastic
Dirt has a microbiome, and it may double as an antidepressant
Microbes in art
