May 27, 2017

Today’s digest has some great papers in the section-Plant, root and soil microbiome

General microbiome

Concentration and Viability of Bacterial Aerosols Associated with Weather in Asian Continental Outflow: Current Understanding – D Zhang – Aerosol Science and Engineering

Specific Virus-Host Genome Interactions Revealed By Tethered Chromosome Conformation Capture – H Li – bioRxiv

Metabolic Integration of Bacterial Endosymbionts through Antimicrobial Peptides – P Mergaert – Trends in Microbiology

Isolation and Characterization of Phenol-Degrading Psychrotolerant Yeasts – N Filipowicz – Water, Air, & Soil Pollution

 

Animal microbiome

Impact of dietary Moringa oleifera leaves on intestinal pathogenic load and histological structure of growing rabbits raised under heat-stress conditions – AY El-Badawi – Animal Production Science

CD44 deletion leading to attenuation of experimental autoimmune encephalomyelitis results from alterations in gut microbiome in mice – KN Chitrala – European Journal of Immunology

Meta-analysis To Define a Core Microbiota in the Swine Gut – DB Holman – mSystems

 

Plant, root and soil microbiome

Let the Core Microbiota Be Functional – P Lemanceau – Trends in Plant Science

Phytobiomes – Editor-in-Chief: CA Young

Bio-mining the forest ecosystem of North East India for identification of antimicrobial metabolites from fungi through submerged fermentation – SI Devi – Bioresource Technology

Kisameet Glacial Clay: an Unexpected Source of Bacterial Diversity – SL Svensson – mBio

Microbiome-on-a-Chip: New Frontiers in Plant–Microbiota Research – CE Stanley – Trends in Microbiology

Soil microbial properties as affected by short-term contrasting tillages and cropping systems in a rainfed agro-ecosystem of Northern Odisha – KN Mishra – Evolutionary Ecology

Comparison of rhizosphere properties as affected by different Bt- and non-Bt-cotton (Gossypium hirsutum L.) genotypes and fertilization – M Ahamd – Environmental Monitoring and Assessment

Soil fungal diversity in natural grasslands of the Tibetan Plateau: associations with plant diversity and productivity – T Yang – New Phytologist

Bacterial Microbiome and Nematode Occurrence in Different Potato Agricultural Soils – JD Castillo – Microbial Ecology

Lipopeptides produced by B. amyloliquefaciens NJN-6 altered the soil fungal community and non-ribosomal peptides genes harboring microbial community – J Yuan – Applied Soil Ecology

The differential impact of a native and a non-native ragwort species (Senecioneae) on the first and second trophic level of the rhizosphere food web – P Harkes – Oikos

 

Food microbiology

Impact of thistle rennet from Carlina acanthifolia All. subsp. acanthifolia on bacterial diversity and dynamics of a specialty Italian raw ewes’ milk cheese – F Cardinali – International Journal of Food Microbiology

High-throughput metataxonomic characterization of the raw milk microbiota identifies changes reflecting lactation stage and storage conditions – CJ Doyle – International Journal of Food Microbiology

 

Built environment microbiology

Direct treatment of high-strength soft drink wastewater using a down-flow hanging sponge reactor: performance and microbial community dynamics – J Liao – Applied Microbiology and Biotechnology

 

Techniques

Comparative Genomic Analysis Reveals Habitat-Specific Genes and Regulatory Hubs within the Genus Novosphingobium – R Kumar – mSystems

Fermentation quality, in vitro digestibility and aerobic stability of total mixed ration silages prepared with whole-plant corn (Zea mays L.) and hulless barley (Hordeum vulgare L.) straw – X Yuan – Animal Production Science

Investigation of compatible solutes synthesis and transport of Virgibacillus halodenitrificans PDB-F2 with complete genome analysis – Y Zhou – International Biodeterioration & Biodegradation

An 18S rRNA Workflow for Characterizing Protists in Sewage, with a Focus on Zoonotic Trichomonads – JM Maritz – Microbial Ecology

 

More microbes

HIV Persistence Alters CXCR4 Expression Patterns In OP9-DL1-Mediated Differentiation Of In Vitro Infected Human Cord Blood CD34+ Cells – T Tsukamoto – bioRxiv

Bacterial Virus Ontology; Coordinating across Databases – C Hulo – MDPI

 

Microbes in news

New insights into the ancestors of all complex life – University of Bristol – News

How a Usually Harmless Bacteria Ended Up Killing 18 People in Wisconsin – S Zhang – The Atlantic

Where you can check beaches for bacteria – Daily Herald

Beware: How to avoid rare flesh-eating bacteria in Chesapeake Bay – M Basch – WTOP

Gut Microbiome Affects Two Nervous System Diseases – AL Komarrof – Journal Watch

Solution to many global challenges may be right under our feet – G Dufficy – AgriLand

Bugging cancer: gut bacteria and the big C – V Martinez – The Irish Times

 

Non-microbiology picks

Marginal Returns And Levels Of Research Grant Support Among Scientists Supported By The National Institutes Of Health – MS Lauer – bioRxiv

Conservation and restoration practices in humid climates – D Tejeda Sartorius – CAB Direct

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