June 8, 2021

Human gut microbiome

Long-term dietary patterns are associated with pro-inflammatory and anti-inflammatory features of the gut microbiome – Bolte et al. Gut

Ginseng polysaccharides alter the gut microbiota and kynurenine/tryptophan ratio, potentiating the antitumour effect of antiprogrammed cell death 1/programmed cell death ligand 1 (anti-PD-1/PD-L1) immunotherapy – Huang et al. Gut

Human skin microbiome

Diurnal variation in the human skin microbiome affects accuracy of forensic microbiome matching – Wilkins et al. Microbiome.

Animal microbiome

Host Species and Geography Differentiate Honeybee Gut Bacterial Communities by Changing the Relative Contribution of Community Assembly Processes – Ge et al. mBio

Animal experiments

Dysbiosis exacerbates colitis by promoting ubiquitination and accumulation of the innate immune adaptor STING in myeloid cells – Shmuel-Galia et al. Immunity

Water Microbiome

Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir – Mo et al. Microbiome

Phages and viruses

A catalog of tens of thousands of viruses from human metagenomes reveals hidden associations with chronic diseases – Tisza and Buck. PNAS. 

Bioinformatics

A Critique of Differential Abundance Analysis, and Advocacy for an Alternative – Quinn et al. arXiv preprint. 

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