June 12, 2021

Have a nice weekend! Today, in this Digest we have several studies covering different aspects of respiratory tract microbiome, in addition with reproductive tract microbiota. We have also a set of papers covering connections between microbiome, food and diet, as well as some articles about beneficial microbes (a.k.a. probiotics). Take a look also to the papers related with Techniques, Animal and Plant microbiome topics.    

General and Human Microbiome

Review: Ankylosing Spondylitis: An Autoimmune Or Autoinflammatory Disease? – Daniele Mauro – Nature Reviews. Rheumatology

Review: Updated Treatment For Acne: Targeted Therapy Based On Pathogenesis – Ichiro Kurokawa – Dermatology And Therapy

Review: Impact Of Intrapartum Antibiotic Prophylaxis For Group B Streptococcus On The Term Infant Gut Microbiome: A State of the Science Review – Vanessa R Garcia – Journal Of Midwifery & Women’s Health

Review: Cellular And Molecular Mediators Of Lymphangiogenesis In Inflammatory Bowel Disease – Dickson Kofi Wiredu Ocansey – Journal Of Translational Medicine

News in BriefMicrobiome Test Spots Oral Cancers Nature Biotechnology

Disruption Of The Pro-inflammatory, Anti-inflammatory Cytokines And Tight Junction proteins expression, associated with changes of the composition of the gut  microbiota in patients with irritable bowel syndrome – V Ivashkin – PloS One

The Effect Of The Combined Use Of Silver Diamine Fluoride And Potassium Iodide In disrupting the plaque biofilm microbiome and alleviating tooth discoloration: A  systematic review – Anahita Haiat – PloS One

SARS-CoV-2 Detection Status Associates With Bacterial Community Composition In patients and the hospital environment – Clarisse Marotz – Microbiome

Assessing The Involvement Of The Placental Microbiome And Virome In Preeclampsia using non coding RNA sequencing – Liron Yoffe – Journal Of Perinatal Medicine

An Emerging Role Of Prevotella Histicola On Estrogen Deficiency-induced Bone Loss through the gut microbiota-bone axis in postmenopausal women and in ovariectomized mice – Zhongxiang Wang – The American Journal Of Clinical Nutrition

Supplier-origin Mouse Microbiomes Significantly Influence Locomotor And anxiety-related behavior, body morphology, and metabolism – Aaron C Ericsson – Communications Biology

Microbial Interaction: Prevotella Spp. Reduce P. Aeruginosa Induced Inflammation In cystic fibrosis bronchial epithelial cells –  Anne Bertelsen- Journal Of Cystic Fibrosis

Extra-skeletal Effects Of Dietary Calcium: Impact On The Cardiovascular System, obesity, and cancer – Denise K Daley – Advances In Food And Nutrition Research

The Association Between Bacteria Colonizing The Upper Respiratory Tract And Lower respiratory tract infection in young children: a systematic review and meta-analysis – Shantelle Claassen-Weitz – Clinical Microbiology And Infection

Exploring The Microbiota-Alzheimer’s Disease Linkage Using Short-term Antibiotic treatment followed by fecal microbiota transplantation – Min Wang – Brain, Behavior, And Immunity

Dispersal Strategies Shape Persistence And Evolution Of Human Gut Bacteria – Falk Hildebrand – Cell Host & Microbe

Review: The Impact Of The Female Genital Tract Microbiome In Women Health And Reproduction: a review – Paula Punzón-Jiménez – Journal Of Assisted Reproduction And Genetics

Dysosmobacter Welbionis Is A Newly Isolated Human Commensal Bacterium Preventing diet-induced obesity and metabolic disorders in mice – Tiphaine Le Roy – Gut (BMJ)

Citizen-science Based Study Of The Oral Microbiome In Cystic Fibrosis And Matched controls reveals major differences in diversity and abundance of bacterial and  fungal species – Jesse R Willis – Journal Of Oral Microbiology

Microbiome, Food and Diet

Legume Consumption And Gut Microbiome In Elderly Chinese Men And Women – Cong Wang – The Journal Of Nutrition

Gut Health Function Of Instant Dehydrated Rice Sticks Substituted With Resistant Starch Types 2 and 4 – Nisa Alfilasari – Current Microbiology

Microalgae As Feed Ingredients: Recent Developments On Their Role In immunomodulation and gut microbiota of aquaculture species – Uma Shankar Sagaram – FEMS Microbiology Letters

Plant-Based Diet Index And Metabolic Risk In Men: Exploring The Role Of The Gut Microbiome – Yanping Li – The Journal Of Nutrition

Beneficial Microbes and Compounds

The Effects Of Limosilactobacillus Reuteri LR-99 Supplementation On Body Mass Index, Social Communication, Fine Motor Function, and Gut Microbiome Composition in  Individuals with Prader-Willi Syndrome: a Randomized Double-Blinded  Placebo-Controlled Trial – Xue-Jun Kong – Probiotics And Antimicrobial Proteins

Lactobacillus Paracasei Modulates The Gut Microbiota And Improves Inflammation In type 2 diabetic rats – Zhu Zeng – Food & Function

Mixture Of Probiotics Reduces Inflammatory Biomarkers And Improves The oxidative/nitrosative profile in people with rheumatoid arthritis – Ligia Aparecida Trintin Cannarella – Nutrition

Xiao-Chai-Hu-Tang Ameliorates Tumor Growth In Cancer Comorbid Depressive Symptoms via modulating gut microbiota-mediated TLR4/MyD88/NF-kB signaling pathway – Shiyun Shao- Phytomedicine

Lactobacillus Rhamnosus GG Orchestrates An Anti-tumor Immune Response – Joshua A Owens – Cellular And Molecular Gastroenterology And Hepatology

Lactobacillus Strains Derived From Human Gut Ameliorate Metabolic Disorders Via modulation of gut microbiota composition and short-chain fatty acids metabolism – G Wang – Beneficial Microbes

Animal Microbiome

Review: The Specification And Function Of Enteroendocrine Cells In Drosophila And Mammals: A Comparative – Xingting Guo – The FEBS Journal

Enterocins As Novel Feed Additives In Rabbit Diet: Enterocin Ent M And Durancin Ent ED26E/7, Their Combination, and Effects on Microbiota, Caecal Fermentation, and  Enzymatic Activity – M. Pogány Simonová – Probiotics And Antimicrobial Proteins

The Effect Of Lipid Metabolism Regulator Anthocyanins From Aronia Melanocarpa On 3T3-L1 preadipocytes and C57BL/6 mice via activating AMPK signaling and gut microbiota – Chunping Chen – Food & Function

A Probiotic Has Differential Effects On Allergic Airway Inflammation In A/J And C57BL/6 mice and is correlated with the gut microbiome – Mateus B Casaro – Microbiome

16S RRNA Gene Amplicon Sequencing Of Gut Microbiota From Naked Carp (Gymnocypris przewalskii) in Qinghai Lake, China – Fayan Wang – Microbiology Resource Announcements

Sulfated Modification Enhances The Modulatory Effect Of Yam Polysaccharide On Gut microbiota in cyclophosphamide-treated mice –  Rong Huang – Food Research International 

Diversity And Interactions Among Triatomine Bugs, Their Blood Feeding Sources, Gut microbiota and Trypanosoma cruzi in the Sierra Nevada de Santa Marta in Colombia – Claribel Murillo-Solano – Scientific Reports

Rumen Microbiota Of Tibetan Sheep (Ovis Aries) Adaptation To Extremely Cold Season on the Qinghai-Tibetan Plateau – Qingshan Fan – Frontiers In Veterinary Science

Plant Microbiome

Phytohormones Selectively Affect Plant Parasitic Nematodes Associated With Arabidopsis roots.-  Md Maniruzzaman Sikder- The New Phytologist

Bacterial Community Structure And The Dominant Species In Imported Pollens For Artificial Pollination –  Su-Hyeon Kim – The Plant Pathology Journal

Structure And Variation Of Root-associated Bacterial Communities Of Cyperus Rotundus L. in the contaminated soils around Pb/Zn mine sites – Pin Gao – Environmental Science And Pollution Research International

Antibiotic Resistance Gene-Carrying Plasmid Spreads Into The Plant Endophytic Bacteria using Soil Bacteria as Carriers – Han Xu – Environmental Science & Technology

Flavonoids And Saponins In Plant Rhizospheres: Roles, Dynamics, And The Potential for agriculture – Akifumi Sugiyama – Bioscience, Biotechnology, And Biochemistry

Host Specific Endophytic Microbiome Diversity And Associated Functions In Three varieties of scented black rice are dependent on growth stage – K Malabika Singha- Scientific Reports

Microbiome: Bioinformatics and Techniques

Constraining PERMANOVA And LDM To Within-set Comparisons By Projection Improves The efficiency of analyses of matched sets of microbiome data – Zhengyi Zhu – Microbiome

Interrogating The Bovine Reproductive Tract Metagenomes Using Culture-independent approaches: a systematic review – Chian Teng Ong – Animal Microbiome

Laboratory Aspects Of Donor Screening For Fecal Microbiota Transplantation At A Korean Fecal Microbiota Bank –  Hyun Soo Seo – Annals Of Laboratory Medicine

Profiling System Of Oral Microbiota Utilizing Polymerase Chain Reaction-restriction fragment length polymorphism analysis – Hiroto Sano – Journal Of Oral Biosciences

Review: Organoids And Organs-on-chips: Insights Into Human Gut-microbe Interactions – Jens Puschhof – Cell Host & Microbe

Development Of A Time-series Shotgun Metagenomics Database For Monitoring Microbial communities at the Pacific coast of Japan –  Kazutoshi Yoshitake – Scientific Reports


Silicon Dioxide Nanoparticles Induced Neurobehavioral Impairments By Disrupting microbiota-gut-brain axis – Jun Diao – Journal Of Nanobiotechnology

Decay Of Infectious SARS-CoV-2 And Surrogates In Aquatic Environments – Laura Sala-Comorera –  Water Research

The Efficacy And Effect On Gut Microbiota Of An Aflatoxin Binder And A Fumonisin esterase using an in vitro simulator of the human intestinal microbial ecosystem  (SHIME®) – Kaat Neckermann – Food Research International

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