Starting the new year with a new digest out, full of interesting findings.
Check it out and see you at MVIF next week!
Human gut microbiome
Early life microbial succession in the gut follows common patterns in humans across the globe – Guilherme Fahur Bottino – Nature Communications
Epigenetic phase variation in the gut microbiome enhances bacterial adaptation – Mi Ni – bioRxiv
Gut microbiome signatures of vegan, vegetarian and omnivore diets and associated health outcomes across 21,561 individuals – Gloria Fackelmann – Nature Microbiology
Ecological dynamics of Enterobacteriaceae in the human gut microbiome across global populations – Qi Yin – Nature Microbiology
Interconnected pathways link faecal microbiota plasma lipids and brain activity to childhood malnutrition related cognition – T. Portlock – Nature Communications
Environmental microbiome, human fungal pathogens, and antimicrobial resistance – Zhen-Zhen Yan – Trends in Microbiology
An RNase III–processed sRNA coordinates sialic acid metabolism of Salmonella enterica during gut colonization – Ziying Chen – PNAS
Metagenome-guided culturomics for the targeted enrichment of gut microbes – Jeremy Armetta – Nature Communications
The gut microbiota-SCFA-inflammation axis in patients with AECOPD – Hengjing Zhu – PlosOne
Modulating the human gut microbiome and health markers through kombucha consumption: a controlled clinical study – Gertrude Ecklu-Mensah – Scientific Reports
Vaginal microbiome
Cervicovaginal microbiome and natural history of Chlamydia trachomatis in adolescents and young women – Mykhaylo Usyk – Cell
Nasal microbiome
Nasal microbiota predictors for methicillin resistant Staphylococcus colonization in critically ill children – Kathleen Zani – PlosOne
Animal experiments
Fecal Microbiota Transplantation (FMT) From a Human at Low Risk for Alzheimer’s Disease Improves Short-Term Recognition Memory and Increases Neuroinflammation in a 3xTg AD Mouse Model – Claire Chevalier – Genes, Brain and Behavior
Short-chain fatty acid metabolites propionate and butyrate are unique epigenetic regulatory elements linking diet, metabolism and gene expression – Michael Nshanian – Nature Metabolism
The efficacy of Lacticaseibacillus paracasei MSMC39-1 and Bifidobacterium animalis TA-1 probiotics in modulating gut microbiota and reducing the risk of the characteristics of metabolic syndrome: A randomized, double-blinded, placebo-controlled study – Wongsakorn Luangphiphat – PlosOne
Animal microbiome
Microbiota assembly of specific pathogen-free neonatal mice – Elizabeth Kennedy – bioRxiv
Organ-Specific Microbiomes of Biomphalaria Snails – Lauren V Carruthers – bioRxiv
Approaching the sterile womb theory in dogs and cats: A multi-technique investigation – Penelope Banchi – Theriogenology
Altered microbiome and metabolome profiling in fearful companion dogs: An exploratory study – Luigi Sacchettino – PlosOne
Bioinformatics
microGalaxy: A gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data – Engy Nasr – bioRxiv
Podcasts
I’ve been regularly updating this repo https://github.com/SvetlanaUP/Microbiome-etc-Podcasts with podcasts related to microbiome science: science, microbiology and bioinformatics. If I missed your favorite one, feel free to add it. Thanks!
Microbiome Digest - Bik's Picks 