Highlights!
Review: A relational framework for microbiome research with Indigenous communities – Alyssa C Bader – Nature Microbiology
Review: Microbiome ownership for Indigenous peoples – Matilda Handsley-Davis – Nature Microbiology
Human and General Microbiome
Expanded microbiome niches of RAG-deficient patients – Ryan A Blaustein – Cell Reports Medicine
Low dietary fiber intake impairs small intestinal Th17 and intraepithelial T cell development over generations – Charlotte J Royer – Cell Reports
Iron acquisition by a commensal bacterium modifies host nutritional immunity during Salmonella infection – Luisella Spiga – Cell Host & Microbe
Microbiome profile and calprotectin levels as markers of risk of recurrent Clostridioides difficile infection – Silvia Vázquez-Cuesta – Frontiers in Cellular and Infection Microbiology
Safety and tolerability of frozen, capsulized autologous faecal microbiota transplantation. A randomized double blinded phase I clinical trial – Måns Stefansson – PloS One
Metabolism of azo food dyes by bacterial members of the human gut microbiome – Riley Elder – Anaerobe
Genetic risk score in multiple sclerosis is associated with unique gut microbiome – Noha S Elsayed – Scientific Reports
Antisense inhibition of RNA polymerase α subunit of Clostridioides difficile – Rusha Pal – Microbiology Spectrum
Review: Metabolic signature for a dysbiotic microbiome in the female genital tract: A systematic review and meta-analysis – Biban Gill – American Journal of Reproductive Immunology
Review: Influence of Plant-Based Diet on the Cardiovascular System: A Narrative Review – Gurusha Jangid – Cardiology in Review
Review: Bile acid and its bidirectional interactions with gut microbiota: a review – Shuqi He – Critical Reviews in Microbiology
Animal Microbiome
Population mixing mediates the intestinal flora composition and facilitates invasiveness in a globally invasive fruit fly – Yidan Wang – Microbiome
Diet-related factors strongly shaped the gut microbiota of Japanese macaques – Wanyi Lee – American Journal of Primatology
Skin and gut microbiomes of tadpoles vary differently with host and water environment: a short-term experiment using 16S metabarcoding – Bárbara Santos – Scientific Reports
Multi-omics revealed the long-term effect of ruminal keystone bacteria and the microbial metabolome on lactation performance in adult dairy goats – Dangdang Wang – Microbiome
The multi-kingdom microbiome of the goat gastrointestinal tract – Yanhong Cao – Microbiome
Multi-breed host rumen epithelium transcriptome and microbiome associations and their relationship with beef cattle feed efficiency – P A S Fonseca – Scientific Reports
Animal Model Microbiome
Select symbionts drive high IgA levels in the mouse intestine – Shanshan Zhang – Cell Host & Microbe
Blocked conversion of Lactobacillus johnsonii derived acetate to butyrate mediates copper-induced epithelial barrier damage in a pig model – Yang Wen – Microbiome
Laboratory mice with a wild microbiota generate strong allergic immune responses – Junjie Ma – Science Immunology
Plant Microbiome
Host genetic variation drives the differentiation in the ecological role of the native Miscanthus root-associated microbiome – Niuniu Ji – Microbiome
Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere – Daniel Garrido-Sanz – Microbiome
Microbially produced fertilizer provides rhizobacteria to hydroponic tomato roots by forming beneficial biofilms – Yuya Sato – Applied Microbiology and Biotechnology
Terpenes modulate bacterial and fungal growth and sorghum rhizobiome communities – Ming-Yi Chou – Microbiology Spectrum
Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development – Ella T Sieradzki – mSystems
Environmental Microbiome
The presence of benzene ring activating CoA ligases for aromatics degradation in the ANaerobic MEthanotrophic (ANME) archaea – Wei-Wei Liu – Microbiology Spectrum
Microbial biogeography of pit mud from an artificial brewing ecosystem on a large time scale: all roads lead to Rome – Jun-Lan Mei – mSystems
Stable microbial community in compacted bentonite after 5 years of exposure to natural granitic groundwater – Katja Engel – mSphere
Microbiome Analysis Tools, Techniques and Resources
Impact of Experimental Bias on Compositional Analysis of Microbiome Data – Yingtian Hu – Genes
happi: a hierarchical approach to pangenomics inference – Pauline Trinh – Genome Biology
Integrating a tailored recurrent neural network with Bayesian experimental design to optimize microbial community functions – Jaron C Thompson – PLoS Computational Biology
Review: Uncultured prokaryotic genomes in the spotlight: An examination of publicly available data from metagenomics and single-cell genomics – Koji Arikawa – Computational and Structural Biotechnology Journal