Human gut microbiome
Strain-level functional variation in the human gut microbiota based on bacterial binding to artificial food particles – Patnode et al. Cell Host & Microbe.
Debaryomyces is enriched in Crohn’s disease intestinal tissue and impairs healing in mice – Jain et al. Science.
Dysbiosis in Metabolic Genes of the Gut Microbiomes of Patients with an Ileo-anal Pouch Resembles That Observed in Crohn’s Disease – Dubinsky et al. mSystems
Human-associated microbiota suppress invading bacteria even under disruption by antibiotics – Letten et al. ISME
Early life
Key bacterial taxa and metabolic pathways affecting gut short-chain fatty acid profiles in early life – Tsukuda et al. ISME
Human oral microbiome
Tonsillar Microbiota: a Cross-Sectional Study of Patients with Chronic Tonsillitis or Tonsillar Hypertrophy – Wu et al. mSystems
Animal experiments
Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice – Yilmaz et al. Cell Host & Microbe
Bioinformatics
ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data – Deng & Delart. BMC Bioinformatics
