January 27, 2021

General microbiome

[REVIEW]The complexities of the diet-microbiome relationship: advances and perspectives – Leeming et al. – Genome Medicine

Human skin microbiome

A mixed community of skin microbiome representatives influences cutaneous processes more than individual members – Loomis et al. – Microbiome

Analysis of the Composition and Functions of the Microbiome in Diabetic Foot Osteomyelitis Based on 16S rRNA and Metagenome Sequencing Technology – Zou et al. – Diabetes

Human gut microbiome

Gut microbiota condition the therapeutic efficacy of trastuzumab in HER2-positive breast cancer – Di Modica et al. – Cancer Research

[REVIEW]Role of the gut microbiota in type 2 diabetes and related diseases – Yang et al. – Metabolism

Animal microbiome (for animals in the wild)

Seasonal shifts in the gut microbiome indicate plastic responses to diet in wild geladas – Baniel et al. – Microbiome

Taxonomic and functional adaption of the gastrointestinal microbiome of goats kept at high altitude (4800 m) under intensive or extensive rearing conditions – Zhang et al. – FEMS Microbiology Ecology

Shifts in bacterial communities and antibiotic resistance genes in surface water and gut microbiota of guppies (Poecilia reticulata) in the upper Rio Uberabinha, Brazil – Jia et al. – Ecotoxicology and Environmental Safety

Water and extremophile microbiome (sea, rivers, lakes, glaciers, permafrost, high-salt)

Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing – Okazaki et al. – Microbiome

Microbiota entrapped in recently-formed ice: Paradana Ice Cave, Slovenia – Mulec et al. – Scientific Reports

Sea‐ice microbial communities in the Central Arctic Ocean: Limited responses to short‐term pCO2 perturbations – Torstensson et al. – Limnology and Oceanography

Built environment (subways, indoor surfaces)

Bacterial community assemblages in classroom floor dust of 50 public schools in a large city: characterization using 16S rRNA sequences and associations with environmental factors – Park et al. – Microbiome

[REVIEW]Plastics and the microbiome: impacts and solutions – Lear et al. – Environmental Microbiome

Bioinformatics

[REVIEW]Understanding the host-microbe interactions using metabolic modeling – Jansma & El Aidy – Microbiome

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