General microbiome

Prospect: Know your neighbor: Microbiota and host epithelial cells interact locally to control intestinal function and physiology – Felix Sommer – BioEssays

Review: Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance – Andrés Moya – Trends in Microbiology

Human oral microbiome

Successful enrichment and recovery of whole mitochondrial genomes from ancient human dental calculus – Andrew T. Ozga – American Journal of Physical Anthropology

Oral microbiota species in acute apical endodontic abscesses – Noelle George – Journal of Oral Microbiology

Human gut microbiome

Changes in the Functional Potential of the Gut Microbiome Following Probiotic Supplementation during Helicobacter Pylori Treatment – Bumjo Oh – Helicobacter

Gut microbiota produce alcohol and contribute to NAFLD – Lixin Zhu – Gut

Probiotics

Probiotic Gut Microbiota Isolate Interacts with Dendritic Cells via Glycosylated Heterotrimeric Pili – Hanne L. P. Tytgat – PLOS ONE

Animal microbiome

Metagenomic Survey of Viral Diversity Obtained from Feces of Subantarctic and South American Fur Seals – Mariana Kluge – PLOS ONE

Effect of Antibiotic Treatment on the Gastrointestinal Microbiome of Free-Ranging Western Lowland Gorillas (Gorilla g. gorilla) – Klára Vlčková – Microbial Ecology

Induction of trap formation in nematode-trapping fungi by bacteria-released ammonia – H.N. Su – Letters in Applied Microbiology

Plant, root, and soil microbiome

The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots – Larry M. York – Journal of Experimental Botany

Impact of an invasive N2-fixing tree on arbuscular mycorrhizal fungi and development of native species – Alejandra, Guisande-Collazo – AoB Plants

Shifts in taxonomic and functional microbial diversity with agriculture: How fragile is the Brazilian Cerrado? – Renata Carolini Souza – BMC Microbiology

Water microbiome

High Bacterial Diversity and Phylogenetic Novelty in Dark Euxinic Freshwaters Analyzed by 16S Tag Community Profiling – Tomàs Llorens-Marès – Microbial Ecology

Food and medicine microbiology

Characterization of malolactic bacteria isolated from Aosta Valley wines and evidence of psychrotrophy in some strains – I. Vigentini – Journal of Applied Microbiology

A review of melanized (black) fungal contamination in pharmaceutical products—incidence, drug recall and control measures – R. Vijayakumar – Journal of Applied Microbiology

Microbes in the news

Researchers Extract and Sequence Ancient DNA From Biofilm Coating Teeth – Genome Web

New green toothpaste reveals biofilm – Maria Perno Goldie – Dentistry IQ

Video: Pink Lake Mystery Solved: Lake Hillier Bacteria – SciShow – YouTube

SlideShow: Experiments with my Microbiome – Richard Sprague – LinkedIn

Video: #GMFH2016 (5th Gut Microbiota for Health World Summit ) Interviews: Prof. Joël Doré – YouTube
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