General microbiome

[COMMENT]The role of pharmacomicrobiomics in HIV prevention, treatment, and women’s health – Swanson, Basting & Klatt

Early life

Characterization of the Gut and Skin Microbiome over Time in Young Children with IgE-Mediated Food Allergy – Roth et al. – Nutrients

Human gut microbiome

[REVIEW]A systematic review of the relationship between gut microbiota and prevalence of pancreatic diseases – Jankowski, Fichna & Tarasiuk-Zawadzka – Microbial Pathogenesis

Beneficial microbiome and diet interplay in early-onset colorectal cancer – Zhou et al. – EMBO Molecular Medicine

Age-stratification reveals age-specific intestinal microbiota signatures in juvenile idiopathic arthritis – Budzinski et al. – Molecular and Cellular Pediatrics

[PREPRINT]Human gut archaea collection from Estonian population – Pantiukh & Org – bioRxiv

Analysis of early childhood intestinal microbial dynamics in a continuous-flow bioreactor – Granato et al. – Microbiome

Animal experiments (mouse/rat experiments, chickens/pigs on different diets)

Increase in body weight is lowered when mice received fecal microbiota transfer from donor mice treated with the AT1 receptor antagonist telmisartan – Freschi et al. – Frontiers in Pharmacology

Plant, root, and soil microbiome

Interaction between root exudates and PFOS mobility: Effects on rhizosphere microbial health in wetland ecosystems – Lu et al. – Environmental Pollution

[PREPRINT]The activity of soil microbial taxa in the rhizosphere predicts the success of root colonization – Harris et al. – bioRxiv

[PREPRINT]Fertilization impacts microbiomes along the grassland trophic chain – Jetter et al. – bioRxiv

Waste

Shallow shotgun sequencing of healthcare waste reveals plastic-eating bacteria with broad-spectrum antibiotic resistance genes – Siew et al. – Environmental Pollution

Bioinformatics

EURYALE: A versatile Nextflow pipeline for taxonomic classification and functional annotation of metagenomics data – Cavalcante et al. – IEEE Xplore
EURYALE

[PREPRINT]MCSPACE: inferring microbiome spatiotemporal dynamics from high-throughput co-localization data – Uppal et al. – bioRxiv