August 4, 2021

Have a nice day!! Today, in this Digest: a study of the microbiome structure and host relationship in a Korean population, Microbiome and vitamin D3, microbiome and cystic fibrosis, a study about Faecalibacterium prausnitzii diversity under liver cirrhosis, and more! 

Human and General Microbiome

Review: Clostridioides difficile Infection in Pediatric Inflammatory Bowel Disease: A Clinician’s Dilemma – Máire A Conrad – Journal of the Pediatric Infectious Diseases Society

Minireview: The Gut-Lung Axis in Cystic Fibrosis – Courtney E Price – Journal of Bacteriology

Comprehensive Strain-Level Analysis of the Gut Microbe Faecalibacterium prausnitzii in Patients with Liver Cirrhosis – Yaowen Chen – mSystems

Gut Microbiome Structure and Association with Host Factors in a Korean Population – Mi Young Lim – mSystems

Pilot trial of vitamin D3 and calcifediol in healthy vitamin D deficient adults: does it change the fecal microbiome? – Albert Shieh – The Journal of Clinical Endocrinology and Metabolism

Deciphering the role of skin surface microbiome in skin health: an integrative multi-omics approach reveals three distinct metabolite-microbe clusters – Pierre-François Roux – The Journal of Investigative Dermatology

Preprint: Gut microbiome dysbiosis during COVID-19 is associated with increased risk for bacteremia and microbial translocation. – Mericien Venzon – Research Square

Novel microbiota-related gene set enrichment analysis identified osteoporosis associated gut microbiota from autoimmune diseases – Rong-Rong Cao – Journal of Bone and Mineral Metabolism

Sulfation of Arabinogalactan Proteins Confers Privileged Nutrient Status to Bacteroides plebeius – Jose Munoz-Munoz – mBio

Beneficial Microbes, Compounds, and Interventions

Review: Bifidobacterium longum: Protection against Inflammatory Bowel Disease – Shunyu Yao – Journal of Immunology Research

Gluten-free diet can ameliorate the symptoms of non-celiac autoimmune diseases – Aaron Lerner – Nutrition Reviews

Protein supplementation during an energy-restricted diet induces visceral fat loss and gut microbiota amino acid metabolism activation: a randomized trial – Pierre Bel Lassen – Scientific Reports

Food Microbiome

Metabolic Features of Ganjang (a Korean Traditional Soy Sauce) Fermentation Revealed by Genome-Centered Metatranscriptomics – Byung Hee Chun – mSystems

Animal Microbiome

Variation in Microbial Exposure at the Human-Animal Interface and the Implications for Microbiome-Mediated Health Outcome. – Sahana Kuthyar – mSystems

Contrasting heat stress response patterns of coral holobionts across the Red Sea suggest distinct mechanisms of thermal tolerance – Christian R Voolstra – Molecular Ecology

Plant Microbiome

Site and Organ-Specific Culture-Dependent Endophytic Diversity of Crocus sativus L (Saffron) in Kashmir Himalaya, India. – Bushra Jan – Microbial ecology

Microbiome and Environment

Biodegradation of metoprolol in oxic and anoxic hyporheic zone sediments: unexpected effects on microbial communities – Cyrus Rutere – Applied Microbiology and Biotechnology

Microbial assemblages and methanogenesis pathways impact methane production and foaming in manure deep-pit storages – Fan Yang – PloS One

Preprint: Multi-plasmid clash in a bacterial community: plasmid viability depends on the ecological setting of hosts – Cindy Given – bioRxiv

Preprint: Genomic remnants of ancestral hydrogen and methane metabolism in Archaea drive anaerobic carbon cycling – Panagiotis S. Adam – bioRxiv

Microbiome and Forensic Research

Touch microbiome as a potential tool for forensic investigation: A pilot study – Noemi Procopio – Journal of Forensic and Legal Medicine

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