General Microbiome

Chlamydia retesting and retest positivity rates: results from a state-wide laboratory data linkage study in Tasmania, 2012–13 – Nicola Stephens – Sexual Health

 

Human Gut Microbiome

Gut metagenomes of type 2 diabetic patients have characteristic single-nucleotide polymorphism distribution in Bacteroides coprocola – Yaowen Chen – Microbiome

 

Animal Microbiome

Influence of different inclusion levels and chain length of inulin on microbial ecology and the state of mucosal protective barrier in the large intestine of young pigs – M. Barszcz – Animal Production Science

The role and interaction of gut microflora and local immune response in Campylobacter jejuni infection in chicken – Zifeng Han – University of Veterinary Medicine Hannover Clinic for Poultry

 

Plant, Root and Soil Microbiome

Changes in soil microbial communities due to biological invasions can reduce allelopathic effects – Yang-Ping Li – Journal of Applied Ecology

 

Water and extremophile microbiome

Cyanobacterial Contribution to Travertine Deposition in the Hoyoux River System, Belgium – Julia Kleinteich – Microbial Ecology

Sulfur-Oxidizing Bacteria Mediate Microbial Community Succession and Element Cycling in Launched Marine Sediment – Hideyuki Ihara – Aquatic Microbiology 

 

Built Environment Microbiology

Draft genome sequences of eight bacteria isolated from the indoor environment: Staphylococcus capitis strain H36, S. capitis strain H65, S. cohnii strain H62, S. hominis strain H69, Microbacterium sp. strain H83, Mycobacterium iranicum strain H39, Plantibacter sp. strain H53, and Pseudomonas oryzihabitans strain H72 – Despoina S. Lymperopoulou – Standards in Genomic Sciences

 

Techniques

High throughput 16SrRNA gene sequencing reveals the correlation between Propionibacterium acnes and sarcoidosis – Meng-Meng Zhao – Respiratory Research

Critical issues in mycobiota analysis – Bettina Halwachs – Microbial Symbioses

 

Microbiome in News

Abstract A18: Gut microbiota changes in response to treatment with ursodeoxycholic acid (UDCA) – Talima Pearson – Cancer Research

The AGA’s Fecal Microbiota Transplantation National Registry: An Important Step Toward Understanding Risks and Benefits of Microbiota Therapeutics – Colleen R. Kelly – Gastroenterology

Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica – Zhemin Zhou – bioRxiv

Patterns of genomic variation in the opportunistic pathogen Candida glabrata suggest the existence of mating and a secondary association to the human host – Laia Carreté – bioRxiv