General microbiome

Prediction of relevant biomedical documents: a human microbiome case study – Paul Thompson – BioData Mining

Pregnancy and birth

High frequencies of antibiotic resistance genes in infants’ meconium and early fecal samples – M. J. Gosalbes – Journal of Developmental Origins of Health and Disease

Human gut microbiome

A Metagenomic Investigation of the Duodenal Microbiota Reveals Links with Obesity – Emmanouil Angelakis – PLOS ONE

Gut microbiota diversity predicts immune status in HIV-1 infection – Nowak, Piotr – AIDS

The human gut mycobiome: pitfalls and potentials-a mycologist’s perspective – Mallory J Suhr – Mycologia

Animal microbiome

Cloacal Microbiome Structure in a Long-Distance Migratory Bird Assessed Using Deep 16sRNA Pyrosequencing – Jakub Kreisinger – PLOS ONE

Plant, root, and soil microbiome

Plant Growth-Promoting Rhizobacteria Stimulate Vegetative Growth and Asexual Reproduction of Kalanchoe daigremontiana – Yong-Soon Park – The Plant Pathology Journal

Water / Extremophile microbiome

Activity and community structures of sulfate-reducing microorganisms in polar, temperate and tropical marine sediments – Alberto Robador – The ISME Journal

Ecology and application of haloalkaliphilic anaerobic microbial communities – João A.B. Sousa – Applied Microbiology and Biotechnology

Microbiological characterization of aquatic microbiomes targeting taxonomical marker genes and antibiotic resistance genes of opportunistic bacteria – Johannes Alexander – Science of the Total Environment

Bioinformatics and metagenomics

Predicting Microbial Interactions Using Vector Autoregressive Model with Graph
Regularization – Xingpeng Jiang – , IEEE/ACM Transactions on Computational Biology and Bioinformatics
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