Human and General Microbiome

Multi-site microbiota alteration is a hallmark of kidney stone formation – Kait F Al – Microbiome

Culturing the unculturables: strategies, challenges, and opportunities for gut microbiome study – Asha Yadav – Journal of Applied Microbiology

Trans-vaccenic acid reprograms CD8(+) T cells and anti-tumour immunity – Hao Fan – Nature

Multi-omics analysis of hospital-acquired diarrhoeal patients reveals biomarkers of enterococcal proliferation and Clostridioides difficile infection – Marijana Bosnjak – Nature Communications

Why are so many enteric pathogen infections asymptomatic? Pathogen and gut microbiome characteristics associated with diarrhea symptoms and carriage of diarrheagenic E. coli in northern Ecuador – Kelsey J Jesser – Gut Microbes

Gut microbiome and frailty: insight from genetic correlation and mendelian randomization – Guanghui Cui – Gut Microbes

Review: Metabolic exchanges are ubiquitous in natural microbial communities – Christian Kost – Nature Microbiology

Review: Evolution of a Pathogenic Microbiome – Pui Yin Wong – Journal of Clinical Medicine

Review: Evidence for the contribution of the gut microbiome to obesity and its reversal – Douwe F de Wit – Science Translational Medicine

Beneficial Microbes and Compounds

Parabacteroides distasonis ameliorates insulin resistance via activation of intestinal GPR109a – Yonggan Sun – Nature Communications

Galactooligosaccharide Mediates NF-κB Pathway to Improve Intestinal Barrier Function and Intestinal Microbiota – Menglu Xi – Molecules 

A self-stabilized and water-responsive deliverable coenzyme-based polymer binary elastomer adhesive patch for treating oral ulcer – Chunyan Cui – Nature Communications

A key genetic factor governing arabinan utilization in the gut microbiome alleviates constipation – Chengcheng Zhang – Cell Host & Microbe

Meta-analysis: Fiber intake and fiber intervention in depression and anxiety: a systematic review and meta-analysis of observational studies and randomized controlled trials – Hajara Aslam – Nutrition Reviews

Animal Microbiome

Identification of peptides from honeybee gut symbionts as potential antimicrobial agents against Melissococcus plutonius – Haoyu Lang – Nature Communications

A coral-associated actinobacterium mitigates coral bleaching under heat stress – Jie Li – Environmental Microbiome

Symbiodiniaceae photophysiology and stress resilience is enhanced by microbial associations – Jennifer L Matthews – Scientific Reports

Associations of Batrachochytrium dendrobatidis with skin bacteria and fungi on Asian amphibian hosts – Dan Sun – ISME Communications

Experimental mining plumes and ocean warming trigger stress in a deep pelagic jellyfish – Vanessa I Stenvers – Nature Communications

Gut microbiomes of cycad-feeding insects tolerant to β-methylamino-L-alanine (BMAA) are rich in siderophore biosynthesis – Karina Gutiérrez-García – ISME Communications

Environmental Factors and the Symbiont Cardinium Influence the Bacterial Microbiome of Spider Mites Across the Landscape – Huan-Huan Liu – Microbial Ecology

Animal Model Microbiome

Gut microbiota-bile acid crosstalk regulates murine lipid metabolism via the intestinal FXR-FGF19 axis in diet-induced humanized dyslipidemia – Hongtao Xu – Microbiome

Multi-omics data reveals aberrant gut microbiota-host glycerophospholipid metabolism in association with neuroinflammation in APP/PS1 mice – Xiaohang Qian – Gut Microbes

Plant and Environmental Microbiome

Combined application of microbial inoculant and kelp-soaking wastewater promotes wheat seedlings growth and improves structural diversity of rhizosphere microbial community – Xin Song – Scientific Reports

Contribution of ammonia-oxidizing archaea and bacteria to nitrogen transformation in a soil fertilized with urea and organic amendments – Yajun Yang – Scientific Reports

Genomic evidence that microbial carbon degradation is dominated by iron redox metabolism in thawing permafrost – Karl J Romanowicz – ISME Communications

Microbiome Analysis: tools, techniques, and resources

PanDelos-frags: A methodology for discovering pangenomic content of incomplete microbial assemblies – Vincenzo Bonnici – Journal of Biomedical Informatics

PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model – Jun Wu – Bioinformatics

Sparsity of higher-order landscape interactions enables learning and prediction for microbiomes – Shreya Arya – PNAS

Vaccinomics-aided next-generation novel multi-epitope-based vaccine engineering against multidrug resistant Shigella sonnei: Immunoinformatics and chemoinformatics approaches – Sara Aiman – PloS One

Detecting host responses to microbial stimulation using primary epithelial organoids – Jette Bornholdt – Gut Microbes

Review: Exploring microbial worlds: a review of whole genome sequencing and its application in characterizing the microbial communities – Suleiman Aminu – Critical Reviews in Microbiology