December 17, 2021

Human and General Microbiome

Association of microbial dynamics with urinary estrogens and estrogen metabolites in patients with endometriosis – Nhung Le – PloS ONE

Gut Microbiome in Probable Intestinal Tuberculosis and Changes following Anti-Tuberculosis Treatment – Hyuk Yoon – Yonsei Medical Journal

Uncovering the Role of Gut Microbiota in Amino Acid Metabolic Disturbances in Heart Failure Through Metagenomic Analysis – Tomohiro Hayashi – Frontiers in Cardiovascular Medicine

Cerebrospinal Fluid from Healthy Pregnant Women Does Not Harbor a Detectable Microbial Community – Yongyong Kang – Microbiology Spectrum

Stability of healthy subgingival microbiome across space and time – Ryan Tamashiro – Scientific Reports

Successional Stages in Infant Gut Microbiota Maturation – Leen Beller – mBio

Colonization of gut microbiota by plasmid-carrying bacteria is facilitated by evolutionary adaptation to antibiotic treatment – Peng Zhang – The ISME Journal

Bacterial vaginosis and health-associated bacteria modulate the immunometabolic landscape in 3D model of human cervix – Paweł Łaniewski – NPJ Biofilms and Microbiomes

Acute malnutrition and its determinants of preschool children in Bangladesh: gender differentiation – Md Reazul Karim – BMC Pediatrics

SARS-CoV-2 infection reduces human nasopharyngeal commensal microbiome with inclusion of pathobionts – M Nazmul Hoque – Scientific Reports

Gut Mycobiota Dysbiosis in Pulmonary Tuberculosis Patients Undergoing Anti-Tuberculosis Treatment – Demin Cao – Microbiology Spectrum

Prevotella illustrans sp. nov., derived from human oropharyngeal abscess puncture fluid – Michael E J Buhl – International Journal of Systematic and Evolutionary Microbiology

Human and General Microbiome – Reviews

Review: The Role of Gut Microbiota and Genetic Susceptibility in the Pathogenesis of Pancreatitis – Fumin Xu – Gut and Liver

Review: Transcript host-RNA signatures to discriminate bacterial and viral infections in febrile children – Danilo Buonsenso – Pediatric Research

Review: The role of anaerobic bacteria in the development and prevention of colorectal cancer: A review study – Mehrdad Mohammadi – Anaerobe

Review: Lung microbiome, gut-lung axis and chronic obstructive pulmonary disease – Kuppan Gokulan – Current Opinion in Pulmonary Medicine

Systematic review: Gut microbiota modulation as a possible mediating mechanism for fasting-induced alleviation of metabolic complications: a systematic review – Pooneh Angoorani – Nutrition & Metabolism

Systematic review: The relation between the gut microbiome and osteoarthritis: A systematic review of literature – Emanuele Chisari – PloS ONE

Outlook: Ovarian cancer and the microbiome: a complex relationship – Julianna Photopoulos – Nature

Beneficial Microbes and Compounds

Oligofructose-enriched inulin intake, gut microbiome characteristics and the V̇O2peak response to high-intensity interval training in healthy inactive adults – Camilla J Williams – The Journal of Nutrition

Lactiplantibacillus plantarum DMDL 9010 alleviates dextran sodium sulfate (DSS)-induced colitis and behavioral disorders by facilitating microbiota-gut-brain axis balance – Yan-Yan Huang – Food & Function

Long-Term Effects of a Web-Based Low-FODMAP Diet Versus Probiotic Treatment for Irritable Bowel Syndrome, Including Shotgun Analyses of Microbiota: Randomized, Double-Crossover Clinical Trial – Dorit Vedel Ankersen – Journal of Medical Internet Research

Effect of dietary selenium intake on gut microbiota in older population in Enshi region – Zi-Xiong Zhang – Genes and Environment

Animal Microbiome

The bacterial biome of ticks and their wildlife hosts at the urban-wildland interface – Siobhon L Egan – Microbial Genomics

The gut microbiota of wild wintering great bustard (Otis tarda dybowskii): survey data from two consecutive years – Zhiyuan Lu – PeerJ

You are more than what you eat: potentially adaptive enrichment of microbiome functions across bat dietary niches – Melissa R Ingala – Animal Microbiome

Long-term gut microbiome dynamics in Drosophila melanogaster reveal environment-specific associations between bacterial taxa at the family level – Rupert Mazzucco – Proceedings of the Royal Society B. Biological Sciences

Plant and Fungi Microbiome

The Edible Plant Microbiome represents a diverse genetic reservoir with functional potential in the human host – Maria J Soto-Giron – Scientific Reports

Autotoxin Rg(1) Induces Degradation of Root Cell Walls and Aggravates Root Rot by Modifying the Rhizospheric Microbiome – Yanguo Xu – Microbiology Spectrum

Multitrophic Interactions Between Arbuscular Mycorrhizal Fungi, Foliar Endophytic Fungi and Aphids – Nadia Ab Razak – Microbial Ecology

Other Microbes

Bacterial microcompartments for isethionate desulfonation in the taurine-degrading human-gut bacterium Bilophila wadsworthia – Anna G Burrichter – BMC Microbiology

Methods

Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes – Angie Mordant – Microbiology Spectrum

Sample Processing for Metaproteomic Analysis of Human Gut Microbiota – Carmen García-Durán – Methods in Molecular Biology Enhancing Microbiome Research through Genome-Scale Metabolic Modeling – Nana Y D Ankrah – mSystems

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