August 15, 2021

Have a nice Sunday! Today in this Digest, we want to highlight a study that found the effect of human gastric microbiota on premalignant lesions in mice; additionally, new studies about microbiome and Alzheimer’s, relationships between Oxalobacter formigenes and oxalate excretion. Also, we highlight two studies about the role of the coral microbiome and the metapangenome of the significantly ubiquitous SAR324 lineage.   


Human Gastric Microbiota Transplantation Recapitulates Premalignant Lesions In germ-free mice – Soon-Kyeong Kwon – Gut

Effect Of Antibiotic Treatment On Oxalobacter formigenes Colonization Of The Gut microbiome and urinary oxalate excretion – Lama Nazzal – Scientific Reports

Disturbed Microbial Ecology In Alzheimer’s Disease: Evidence From The Gut Microbiota and fecal metabolome – Jianxiong Xi – BMC Microbiology

The Impact Of Enriched Resistant Starch Type-2 Cookies On The Gut Microbiome In Hemodialysis Patients: A Randomized Controlled Trial – Julie Ann Kemp – Molecular Nutrition & Food Research

Coral Microbiome Manipulation Elicits Metabolic And Genetic Restructuring To Mitigate Heat Stress And Evade Mortality – Erika P Santoro – Science Advances

Metapangenomics Reveals Depth-dependent Shifts In Metabolic Potential For The ubiquitous marine bacterial SAR324 lineage – Dominique Boeuf – Microbiome

A. muciniphila Suppresses Colorectal Tumorigenesis By Inducing TLR2/NLRP3-Mediated M1-Like TAMs – Lina Fan – Cancer Immunology Research

Human and General Microbiome

Review: Genes, Environment, And Developmental Timing: New Insights From Translational Approaches To Understand Early Origins Of Respiratory Diseases – Maria J Gutierrez – Pediatric Pulmonology

Review: Contribution Of Biotransformations Carried Out By The Microbiota, Drug-metabolizing Enzymes, And Transport Proteins To The Biological Activities Of Phytochemicals Found In The Diet – Anna Boronat – Advances In Nutrition

Review: The Power And Potential Of Biomap To Elucidate Host-microbiome Interplay In Skin Inflammatory Diseases – Harri Alenius – Experimental Dermatology

Review: Colliding And Interacting Microbiomes And Microbial Communities And Consequences For Human Health – Susan Mills – Environmental Microbiology

Review: Tralokinumab In Atopic Dermatitis – Andreas Wollenberg –Journal Of The German Society of Dermatology 

Review: Skin Microbiome-The Next Frontier For Probiotic Intervention – Isabella J McLoughlin – Probiotics And Antimicrobial Proteins

Minireview: Pathogenic Mechanisms Of Trimethylamine N-oxide-induced Atherosclerosis And Cardiomyopathy – Youjing Zheng – Current Vascular Pharmacology

Gut Microbiome Diversity And Composition Are Associated With Habitual Dairy Intakes: A Cross-sectional Study In Men – Hajara Aslam – The Journal Of Nutrition

Gut Microbiota Profiles And The Role Of Anti-CdtB And Anti-vinculin Antibodies In Patients with FGID – Riccardo Vasapolli – European Journal Of Clinical Investigation

Small Intestinal Bacterial Overgrowth In Patients With Inflammatory Bowel Disease: A case-control study – Uday C Ghoshal – Indian Journal Of Gastroenterology

Position paper: Dangerous Liaisons: Bacteria, Antimicrobial Therapies And Allergic Diseases – Gerdien Tramper-Stranders – Allergy

PD-L1(+) And XCR1(+) Dendritic Cells Are Region-specific Regulators Of Gut Homeostasis – Thais G Moreira – Nature Communications

Simulated Digestion And Fecal Fermentation Behaviors Of Exopolysaccharides From Paecilomyces cicadae Tjj1213 And Its Effects On Human Gut Microbiota – Juanjuan Tian – International Journal Of Biological Macromolecules

Beneficial Microbes, Compounds, and Interventions

Gut Microbiome-short-chain Fatty Acids Interplay In The Context Of Iron Deficiency anaemia – Ana Soriano-Lerma – European Journal Of Nutrition

Chicory Inulin Enhances Fermentation Of 2′-fucosyllactose By Infant Fecal Microbiota and differentially influences immature dendritic cell and T-cell cytokine responses  under normal and Th2-polarizing condition – Renate Akkerman – Food & Function

The Gut Microbiota Mediates The Protective Effects Of Anserine Supplementation On hyperuricaemia and associated renal inflammation. – Jiaojiao Han – Food & Function

Review: Monoterpenes: Current Knowledge On Food Source, Metabolism, And Health Effects – José Fernando Rinaldi de Alvarenga – Critical Reviews In Food Science And Nutrition

Review: Mushrooms On The Plate: Trends Towards NAFLD Treatment, Health Improvement And sustainable diets – Adriana Fontes – European Journal Of Clinical Investigation

Review: Low-Dose Lactulose As A Prebiotic For Improved Gut Health And Enhanced Mineral Absorption. – Tarkan Karakan – Frontiers In Nutrition

Animal Microbiome

Probiotic Lactobacilli Administration Induces Changes In The Fecal Microbiota Of Preweaned Dairy Calves – Sofía Fernández-Ciganda – Probiotics And Antimicrobial Proteins

Metformin Alleviates Choline Diet-induced TMAO Elevation In C57BL/6J Mice By influencing gut-microbiota composition and functionality – Chunyan Su – Nutrition & Diabetes

Phylosymbiotic Structures Of The Microbiota In Mollitrichosiphum Tenuicorpus (Hemiptera: Aphididae: Greenideinae). – Man Qin – Microbial Ecology

Impaired Skeletal Muscle Hypertrophy Signaling And Amino Acid Deprivation Response In ApoE Knockout Mice With An Unhealthy Lipoprotein Distribution – Jakob Agergaard – Scientific Reports

Effect Of Black Ginseng And Silkworm Supplementation On Obesity, The Transcriptome, and the gut microbiome of diet-induced overweight dogs – Miey Park – Scientific Reports

Juvenile Social Defeat Stress Exposure Favors In Later Onset Of Irritable Bowel syndrome-like symptoms in male mice – Kenjiro Matsumoto – Scientific Reports

Plant Microbiome

Plant Developmental Stage Drives The Differentiation In Ecological Role Of The Maize microbiome. – Chao Xiong – Microbiome

Impact Of Biocontrol Microbes On Soil Microbial Diversity In Ginger (Zingiber officinale Roscoe). – Zhiqiang Huang – Pest Management Science

Environmental Microbiome

16S rRNA Gene Metabarcoding Indicates Species-Characteristic Microbiomes In Deep-Sea Benthic Foraminifera – Iines S Salonen – Frontiers In Microbiology

Microbial Community Composition Controls Carbon Flux Across Litter Types In Early Phase Of Litter Decomposition – Marie E Kroeger – Environmental Microbiology

Contribution Of Stochastic Processes To The Microbial Community Assembly On Field-collected Microplastics – Yuanze Sun – Environmental Microbiology


Review: Simultaneous Ribosome Profiling Of Hundreds Of Microbes From The Human Microbiome – Brayon J Fremin – Nature Protocols

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