It’s that time again, where we look back on what happened in the past year. Like last year, I thought it would be nice to choose the best microbiome papers of the year.  Here is a form where you can fill out your top 3 (#1 being the best, and – optional – your second and third choice). I will post the results on January 1, so you can vote until December 31, midnight, Pacific Time. Below the poll are a ton of ideas for papers that I thought were news-worthy. I probably forgot a lot, so feel free to add your own choice. Happy voting and all the best wishes for the New Year.

Update December 28: I have added Kiran Gurung’s favorite papers, so there are even more to choose from!

January 2017

• On the ecosystemic network of saliva in healthy young adults – Egija Zaura – The ISME Journal
• Gut Microbiome of the Canadian Arctic Inuit – Catherine Girard – mSphere
• Links between soil microbial communities and plant traits in a species-rich grassland under long-term climate change – Emma J. Sayer – Ecology and Evolution
• Salivary Gluten Degradation and Oral Microbial Profiles in Healthy Individuals and Celiac Disease Patients – Na Tian – Applied and Environmental Microbiology
• Lactobacillus-Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women – Christina Gosmann – Immunity
• Impact of short-chain galactooligosaccharides on the gut microbiome of lactose-intolerant individuals – M. Andrea Azcarate-Peril – PNAS
• Systematic Characterization and Analysis of the Taxonomic Drivers of Functional Shifts in the Human Microbiome – Ohad Manor – Cell Host & Microbe
• Target Intestinal Microbiota to Alleviate Disease Progression in Amyotrophic Lateral Sclerosis – Yong-guo Zhang – Clinical Therapeutics
• Effects of the Dietary Protein and Carbohydrate Ratio on Gut Microbiomes in Dogs of Different Body Conditions – Qinghong Lia – mBio
• Duodenal Mucosa of Patients With Type 1 Diabetes Shows Distinctive Inflammatory Profile and Microbiota – Silvia Pellegrini – Journal of Clinical Endocrinology & Metabolism
• Morphological evolution of the mammalian cecum and cecal appendix – Heather F. Smith – Comptes Rendus Palevol
• The influence of proton pump inhibitors and other commonly used medication on the gut microbiota – Floris Imhann – Gut Microbes

February 2017

• Parkinson’s disease and Parkinson’s disease medications have distinct signatures of the gut microbiome – Erin M. Hill-Burns – Movement Disorders
• Reduction of Abeta amyloid pathology in APPPS1 transgenic mice in the absence of gut microbiota – T. Harach – Scientific Reports
• Dynamics of the human gut microbiome in inflammatory bowel disease – Jonas Halfvarson – Nature Microbiology
• The enteric nervous system promotes intestinal health by constraining microbiota composition – Annah S. Rolig – PLOS Biology
• Bacterial Topography of the Healthy Human Lower Respiratory Tract – Robert P. Dickson – mBio
• Divergent Relationships between Fecal Microbiota and Metabolome following Distinct Antibiotic-Induced Disruptions – Jocelyn M. Choo – mSphere
• Host Genotype and Gut Microbiome Modulate Insulin Secretion and Diet-Induced Metabolic Phenotypes – Julia H. Kreznar – Cell Reports
• Microbial strain-level population structure and genetic diversity from metagenomes – Duy Tin Truong – Genome Research

March 2017 

• The blood DNA virome in 8,000 humans – Ahmed Moustafa – PLOS Pathogens
• The microbiome of professional athletes differs from that of more sedentary subjects in composition and particularly at the functional metabolic level – Wiley Barton – Gut
• Stochastic assembly produces heterogeneous communities in the Caenorhabditis elegans intestine – Nicole M. Vega – PLOS Biology
• A member of the gut mycobiota modulates host purine metabolism exacerbating colitis in mice – Tyson R. Chiaro – Science Translational Medicine
• NLRP12 attenuates colon inflammation by maintaining colonic microbial diversity and promoting protective commensal bacterial growth – Liang Chen – Nature Immunology
• Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice – Giada De Palma – Science Translational Medicine
• Antibiotic exposure perturbs the gut microbiota and elevates mortality in honeybees – Kasie Raymann – PLOS Biology
• A phylogenetic transform enhances analysis of compositional microbiota data – Justin D Silverman – eLIFE
• Respiratory Microbiome of Endangered Southern Resident Killer Whales and Microbiota of Surrounding Sea Surface Microlayer in the Eastern North Pacific – Stephen A. Raverty – Scientific Reports
• Complex pectin metabolism by gut bacteria reveals novel catalytic functions – Didier Ndeh – Nature

April 2017

• A geographically-diverse collection of 418 human gut microbiome pathway genome databases – Aria S. Hahn – Scientific Data
• Neonatal acquisition of Clostridia species protects against colonization by bacterial pathogens – Yun-Gi Kim – Science
• Origin-Dependent Variations in the Atmospheric Microbiome Community in Eastern Mediterranean Dust Storms – Daniella Gat – Environmental Science & Technology
• Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum – Chihaya Yamada – Cell Chemical Biology
• Fecal metagenomic profiles in subgroups of patients with myalgic encephalomyelitis/chronic fatigue syndrome – Dorottya Nagy-Szakal – Microbiome
• Tunable Expression Tools Enable Single-Cell Strain Distinction in the Gut Microbiome – Weston R. Whitaker – Cell
• Engineered Regulatory Systems Modulate Gene Expression of Human Commensals in the Gut – Bentley Lim – Cell
• Exposure to household furry pets influences the gut microbiota of infants at 3–4 months following various birth scenarios – Hein M. Tun – Microbiome
• Bacterial Metabolism Affects the C. elegans Response to Cancer Chemotherapeutics – Aurian P. García-González – Cell
• A powerful microbiome-based association test and a microbial taxa discovery framework for comprehensive association mapping –
  Hyunwook Koh – Microbiome

May 2017

• Metformin alters the gut microbiome of individuals with treatment-naive type 2 diabetes, contributing to the therapeutic effects of the drug – Hao Wu – Nature Medicine
• Differences in gut microbial composition correlate with regional brain volumes in irritable bowel syndrome – Jennifer S. Labus – Microbiome
• Bacterial colonization and succession in a newly opened hospital – Simon Lax – Science Translational Medicine
• Endothelial TLR4 and the microbiome drive cerebral cavernous malformations – Alan T. Tang – Nature
• Association Between Breast Milk Bacterial Communities and Establishment and Development of the Infant Gut Microbiome – Pia S. Pannaraj – JAMA Pediatrics
• Systemic sclerosis is associated with specific alterations in gastrointestinal microbiota in two independent cohorts – Elizabeth R Volkmann – BMJ Open Gastroenterology
• Gut Microbiome Function Predicts Response to Anti-integrin Biologic Therapy in Inflammatory Bowel Diseases – Ashwin N. Ananthakrishnan – Cell Host & Microbe
• Distinctive microbiomes and metabolites linked with weight loss after gastric bypass, but not gastric banding – Zehra Esra Ilhan – The ISME Journal
• Probiotic Bifidobacterium longum NCC3001 Reduces Depression Scores and Alters Brain Activity: A Pilot Study in Patients With Irritable Bowel Syndrome –  
  Maria Ines Pinto-Sanchez – Gastroenterology
• Engineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation – David T Riglar – Nature Biotechnology

June 2017

• Bread Affects Clinical Parameters and Induces Gut Microbiome-Associated Personal Glycemic Responses – Tal Korem – Cell Metabolism
• Vaginal bacteria modify HIV tenofovir microbicide efficacy in African women – Nichole R. Klatt – Science
• A Human Gut Commensal Ferments Cranberry Carbohydrates To Produce Formate – Ezgi Özcan – Applied and Environmental Microbiology
• Infant Gut Microbiome Associated With Cognitive Development – Alexander L. Carlson – Biological Psychiatry
• Extensive horizontal gene transfer in cheese-associated bacteria – Kevin S Bonham – eLIFE
• Early pregnancy vaginal microbiome trends and preterm birth – Molly J. Stout – American Journal of Obstetrics & Gynecology
• Human age and skin physiology shape diversity and abundance of Archaea on skin – Christine Moissl-Eichinger – Scientific Reports
• Microbial Genetic Composition Tunes Host Longevity – Bing Han – Cell
• Identification of donor microbe species that colonize and persist long term in the recipient after fecal transplant for recurrent Clostridium difficile -Ranjit Kumar – NPJ Biofilms and Microbiomes
• Gut symbiont enhances insecticide resistance in a significant pest, the oriental fruit fly Bactrocera dorsalis– Daifeng Cheng – Microbiome
• Temporal dynamics of the compositions and activities of soil microbial communities post-application of the insecticide chlorantraniliprole in paddy soils– Meng Wu – Ecotoxicology and Environmental Safety
• Disease Suppressive Soils: New Insights from the Soil Microbiome– Daniel Schlatter – Phytopathology
• Extensive Overlap of Tropical Rainforest Bacterial Endophytes between Soil, Plant Parts, and Plant Species– Haruna et al. – Microbial Ecology
• Bacteria-mediated hypoxia functions as a signal for mosquito development – Kerri Coon – PNAS
• Application of struvite alters the antibiotic resistome in soil, rhizosphere, and phyllosphere– Qing-Lin Chen – Environmental Science & Technology
• Preferential suppression of Anopheles gambiae host sequences allows detection of the mosquito eukaryotic microbiome– Eugeni Belda – Scientific Reports
• Social odours covary with bacterial community in the anal secretions of wild meerkats– Sarah Leclaire – Scientific Reports

July 2017

• The Skin Microbiome of Cohabiting Couples – Ashley A. Ross – mSystems
• Penile Anaerobic Dysbiosis as a Risk Factor for HIV Infection – Cindy M. Liu – mBio
• Early-life disruption of amphibian microbiota decreases later-life resistance to parasites – Sarah A. Knutie – Nature Communications
• Skin microbiota in frogs from the Brazilian Atlantic Forest: Species, forest type, and potential against pathogens – Ananda Brito de Assis – PLOS ONE
• Diabetes Enhances IL-17 Expression and Alters the Oral Microbiome to Increase Its Pathogenicity – E Xiao – Cell Host & Microbe
• Exposure to the leaf litter microbiome of healthy adults protects seedlings from pathogen damage– Natalie Christian – Proceedings of the Royal Society B
• Peripartum Antibiotics Promote Gut Dysbiosis, Loss of Immune Tolerance, and Inflammatory Bowel Disease in Genetically Prone Offspring – Jun Miyoshi – Cell Reports
• Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing – Michael Tessler – Scientific Reports
• Cutaneous Leishmaniasis Induces a Transmissible Dysbiotic Skin Microbiota that Promotes Skin Inflammation – Ciara Gimblet – Cell Host & Microbe
• Imaging mass spectrometry and MS/MS molecular networking reveals chemical interactions among cuticular bacteria and pathogenic fungi associated with fungus-growing ants– Cristopher A Boya P – Scientific Reports
• Strategies for managing rival bacterial communities: lessons from burying beetles.
• Kilner RM. Journal of Animal Ecology
• Major phylum-level differences between porefluid and host rock bacterial communities in the terrestrial deep subsurface– Lily Momper – Environmental Microbiology Reports
• The Intestinal Eukaryotic and Bacterial Biome of Spotted Hyenas: The Impact of Social Status and Age on Diversity and Composition– Emanuel Heitlinger – Frontiers in Cellular and Infection Microbiology
• Temperature variation, bacterial diversity, and fungal infection dynamics in the amphibian skin– Ana V. Longo – Molecular Ecology
• Early-Life Diet Affects Host Microbiota and Later-Life Defenses Against Parasites in Frogs – Sarah A. Knutie – Integrative & Comparitive Biology

August 2017

• The microbial metabolite desaminotyrosine protects from influenza through type I interferon – Ashley L. Steed – Science
• Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment – Julia Fukuyama – PLOS Computational Biology
• Commensal bacteria make GPCR ligands that mimic human signalling molecules
  Louis J. Cohen – Nature
• Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania
  – Samuel A. Smits – Science
• Microbiome-mediated neutrophil recruitment via CXCR2 and protection from amebic colitis – Koji Watanabe – PLOS Pathogens
• Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients – Eli L. Moss – PLOS ONE
• Breast tissue, oral and urinary microbiomes in breast cancer – Hannah Wang – Oncotarget
• Microbial regulation of microRNA expression in the amygdala and prefrontal cortex – Alan E. Hoban – Microbiome
• The US National Mall Microbiome: A Census of Rhizosphere Bacteria Inhabiting Landscape Turf – Jo Anne Crouch – Crop Science
• Environmental drivers of a microbial genomic transition zone in the ocean’s interior – Daniel R. Mende – Nature Microbiology
• Gut Microbiota Modifies Olfactory-Guided Microbial Preferences and Foraging Decisions in Drosophila – Adam Chun-Nin Wong – Current Biology
• Two Gut-Associated Yeasts in a Tephritid Fruit Fly have Contrasting Effects on Adult Attraction and Larval Survival– AM Piper – J Chem Ecol.
• Land cover and forest connectivity alter the interactions among host, pathogen and skin microbiome– CG Becker – Proc Biol Sci.
• Cheating and resistance to cheating in natural populations of the bacterium Pseudomonas fluorescens– John B. Bruce – Evolution
• Transition of the intestinal microbiota of cats with age– Hiroaki Masuoka – PLoS ONE
• Burying beetles regulate the microbiome of carcasses and use it to transmit a core microbiota to their offspring – Shantanu P. Shukla, Molecular Ecology
• Soil nutritional status and biogeography influence rhizosphere microbial communities associated with the invasive tree Acacia dealbata– Casper N. Kamutando, Scientific Reports
• Assessment of Cultivable Oral Bacterial Flora from Important Venomous Snakes of India and Their Antibiotic Susceptibilities– IK Shaikh – Current Microbiology

September 2017

• Numerous uncharacterized and highly divergent microbes which colonize humans are revealed by circulating cell-free DNA – Mark Kowarsky – PNAS
• The Gut Microbiota of Healthy Aged Chinese Is Similar to That of the Healthy Young – Gaorui Bian – mSphere
• Mating in the Closest Living Relatives of Animals Is Induced by a Bacterial Chondroitinase – Arielle Woznica – Cell
• Strains, functions and dynamics in the expanded Human Microbiome Project – Jason Lloyd-Price – Nature
• The intestinal microbiota regulates body composition through NFIL3 and the circadian clock – Yuhao Wang  – Science
• A secreted antibacterial neuropeptide shapes the microbiome of Hydra – René Augustin – Nature Communications
• Pre-treatment microbial Prevotella-to-Bacteroides ratio, determines body fat loss success during a 6-month randomized controlled diet intervention – M F Hjorth – International Journal of Obesity
• Cesarean Section, Formula Feeding, and Infant Antibiotic Exposure: Separate and Combined Impacts on Gut Microbial Changes in Later Infancy – Farzana Yasmin – Frontiers in Pediatrics
• Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women – Benjamin J. Callahan – PNAS
• The Human Salivary Microbiome Is Shaped by Shared Environment Rather than Genetics: Evidence from a Large Family of Closely Related Individuals – Liam Shaw – mBio
• The interactions between gut microbiota and entomopathogenic fungi: a potential approach for biological control of Blattella germanica (L.)– Fan Zhang, Pest Management Science
• Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata.– KH Sharp – Microbiome
• Sources of Variation in the Gut Microbial Community of Lycaeides melissa Caterpillars–  S Chaturvedi – Scientific Reports
• Brevibacillus laterosporus isolated from the digestive tract of honeybees has high antimicrobial activity and promotes growth and productivity of honeybee’s colonies– JM Khaled – Environmental Science and Pollution Research
• Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life – Donovan H. Parks – Nature Microbiology

October 2017

• Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation – Koji Atarashi – Science
• A Gut Microbial Mimic that Hijacks Diabetogenic Autoreactivity to Suppress Colitis – Roopa Hebbandi Nanjundappa – Cell
• Indoor microbiota in severely moisture damaged homes and the impact of interventions – Balamuralikrishna Jayaprakash – Microbiome
• The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls – Sian M.J. Hemmings – Psychosomatic Medicine
• Extensive Core Microbiome in Drone-Captured Whale Blow Supports a Framework for Health Monitoring – Amy Apprill – mSystems
• Household triclosan and triclocarban effects on the infant and maternal microbiome – Jessica V Ribado – EMBO Molecular Medicine
• High-Fat Diet Changes Fungal Microbiomes and Interkingdom Relationships in the Murine Gut – Timothy Heisel – mSphere
• Towards a balanced view of the bacterial tree of life – Frederik Schulz – Microbiome
• Metagenomic Shotgun Sequencing and Unbiased Metabolomic Profiling Identify Specific Human Gut Microbiota and Metabolites Associated with Immune Checkpoint Therapy Efficacy in Melanoma Patients – Arthur E. Frankel – Neoplasia
• Identification of 76 novel B1 metallo-β-lactamases through large-scale screening of genomic and metagenomic data – Fanny Berglund – Microbiome
• Root and rhizosphere bacterial phosphatase activity varies with tree species and soil phosphorus availability in Puerto Rico tropical forest– Kristine Grace Cabugao – Frontiers in Plant Science
• Do host-associated gut microbiota mediate the effect of an herbicide on disease risk in frogs?– SA Knutie – Journal of Animal Ecology
• Exploring the earthworm gut as model for soil microbial ecology– Fatima Hussain, MBL
• Extensive Core Microbiome in Drone-Captured Whale Blow Supports a Framework for Health Monitoring– Amy Apprill – mSystems
• Bacterial microbiomes of individual ectomycorrhizal Pinus sylvestris roots are shaped by soil horizon and differentially sensitive to nitrogen addition– Srisailam Marupakula – Environmental Microbiology
• Nutritional immunology: Diversification and diet-dependent expression of antimicrobial peptides in the black soldier fly Hermetia illucens– H Vogel – Developmental & Comparative Immunology
• Towards standards for human fecal sample processing in metagenomic studies – Paul I Costea – Nature Biotechnology
• Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software – Alexander Sczyrba – Nature Methods

November 2017

• A communal catalogue reveals Earth’s multiscale microbial diversity – Luke R. Thompson – Nature
• A role for bacterial urease in gut dysbiosis and Crohn’s disease – Josephine Ni – Science Translational Medicine
• Human microbiome signatures of differential colorectal cancer drug metabolism – Leah Guthrie – NPJ Biofilms and Microbiomes
• Gut microbiome modulates response to anti–PD-1 immunotherapy in melanoma patients – V. Gopalakrishnan – Science
• The gut mycobiome of the Human Microbiome Project healthy cohort – Andrea K. Nash – Microbiome
• Foliar microbiome transplants confer disease resistance in a critically-endangered plant – Geoffrey Zahn – PeerJ
• Spontaneous body contractions are modulated by the microbiome of Hydra – Andrea P. Murillo-Rincon – Scientific Reports
• Catalogue of antibiotic resistome and host-tracking in drinking water deciphered by a large scale survey – Liping Ma – Microbiome
• Quantitative microbiome profiling links gut community variation to microbial load
  Doris Vandeputte – Nature
• Exercise Alters Gut Microbiota Composition and Function in Lean and Obese Humans – Jacob M. Allen – Medicine & Science in Sports & Exercise
• Feeding strategy shapes gut metagenomic enrichment and functional specialization in captive lemurs– E. A. McKenney – Gut Microbes
• Impact of Dietary Galacto-Oligosaccharide (GOS) on Chicken’s Gut Microbiota, Mucosal Gene Expression, and Salmonella Colonization– Rebecca-Ayme Hughes – Frontiers in Veterinary Science
• Pre-print: The effects of host species and sexual dimorphism differ among root, leaf and flower microbiomes of wild strawberries in situ– Na Wei – bioRxiv
• Innate immune responses to metabolic stress can be detected in rumen fluids– E Trevisi – Research in Veterinary Science
• Wolbachia infection alters the relative abundance of resident bacteria in adult Aedes aegypti mosquitoes, but not larvae.– MD Audsley – Molecular Ecology
• Antibiotics reduce genetic diversity of core species in the honeybee gut microbiome.– K Raymann – Molecular Ecology
• Antibiotics reduce genetic diversity of core species in the honeybee gut microbiome– Kasie Raymann –  Molecular Ecology
• Relative importance of honeydew and resin for the microbial activity in wood ant nest and forest floor substrate – a laboratory study– Veronika Jílková, Soil Biology and Biochemistry
• Accessing the Hidden Microbial Diversity of Aphids: an Illustration of How Culture-Dependent Methods Can Be Used to Decipher the Insect Microbiota– Alina S. Grigorescu – Microbial Ecology
• Diets Alter the Gut Microbiome of Crocodile Lizards– Hai-Ying Jiang – Frontiers in Microbiology
• Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period– Zhigang Zhu – PLoS ONE
• The emergent rhizosphere: imaging the development of the porous architecture at the root-soil interface– J R Halliwell – Scientific Reports
• Priority effects can persist across floral generations in nectar microbial meta-communities– T Hirokazu – Oikos

December 2017

• Long-term stability in the gut microbiome over 46 years in the life of Billy Apple® – Thilini N.Jayasinghe – Human Microbiome Journal
• Subspecies in the global human gut microbiome – Paul I Costea – Molecular Systems Biology
• Hierarchical social networks shape gut microbial composition in wild Verreaux’s sifaka – Amanda C. Perofsky – Proceedings of the Royal Society B
• Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation – John Beaulaurier – Nature Biotechnology
• A microbial survey of the International Space Station (ISS) – Jenna M. Lang – PeerJ
• Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data – Marius Vital – mSystems
• Timing of food intake impacts daily rhythms of human salivary microbiota: a randomized, crossover study – Maria Carmen Collado – FASEB Journal
• Moving beyond microbiome-wide associations to causal microbe identification
  – Neeraj K. Surana – Nature
• Composition of Micro-eukaryotes on the Skin of the Cascades Frog (Rana cascadae) and Patterns of Correlation between Skin Microbes and Batrachochytrium dendrobatidis– Jordan G. Kueneman – Frontiers in Microbiology
• Rhizospere yeasts improve P uptake of a maize arbuscular mycorrhizal association – Marcela Sarabia – Applied Soil Ecology
• Ammonia-oxidizing microorganisms: key players in the promotion of plant growth – Adenike Eunice Amoo – Journal of soil science and plant nutrition
• Temporal and regional variability in the skin microbiome of humpback whales along the Western Antarctic Peninsula.– K C Bierlich – Applied And Environmental Microbiology (DOI not available yet, so linked to PubMed)
• Wild eel microbiome reveals that skin mucus of fish could be a natural niche for aquatic mucosal pathogen evolution.– Miguel Carda-Diéguez – Microbiome
• Key microbial taxa in the rhizosphere of sorghum and sunflower grown in crop rotation.– Tanzelle Oberholster – The Science Of The Total Environment
• Metagenomic analysis of soil and freshwater from zoo agricultural area with organic fertilization.– Aylan K Meneghine – Plos One
• Behavior of bacteriome symbionts during transovarial transmission and development of the Asian citrus psyllid– Hiroki Dan – PLOS ONE
• Differential Microbial Diversity in Drosophila melanogaster: Are Fruit Flies Potential Vectors of Opportunistic Pathogens?– Luis A. Ramírez-Camejo – International Journal of Microbiology
• Comparison of the intestinal mucosal microbiota in dogs siagnosed with idiopathic inflammatory bowel disease and dogs with food-responsive diarrhea before and after treatment– K. Kalenyak – FEMS Microbiology Ecology
• Molecular characterization of tsetse’s proboscis and its response to Trypanosoma congolense infection– Erick O. Awuoche – PLOS Neglected Tropical Diseases
• Volatiles in the Rhizosphere: Bioprospecting for Sustainable Agriculture and Food Security– Shyamalina Haldar – In: Volatiles and Food Security. Springer
• Characterization of Bacterial Volatiles and Their Impact on Plant Health Under Abiotic Stress– Anukool Vaishnav – In: Volatiles and Food Security. Springer
• Prolonged exposure does not increase soil microbial community compositional response to warming along geothermal gradients –Dajana Radujković – FEMS Microbiology Ecology
• Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality– Aura Raulo – Journal of Animal Ecology
• Gut microbiota composition is associated with environmental landscape in honey bees – Julia C Jones –  Ecology and Evolution
• Evolution of microbial communities during electrokinetic treatment of antibiotic-polluted soil– Hongna Li – Ecotoxicology and Environmental Safety
• Microbial community structure and soil pH correspond to methane production in Arctic Alaska soils– Robert Wagner – Environmental Microbiology
• Responses of soil nutrients and microbial communities to three restoration strategies in a karst area, southwest China– Dejun Li – Journal of Environmental Management
• Symbionts protect aphids from parasitic wasps by attenuating herbivore-induced plant volatiles.– Enric Frago – Nature Communications
• Antibiotic-resistant bacteria in the guts of insects feeding on plants: prospects for discovering plant-derived antibiotics.– Katarzyna Ignasiak – BMC Microbiology