Human and General Microbiome

Changes in the gut microbiome of patients with esophageal cancer: a systematic review and meta-analysis based on 16S gene sequencing technology – Jieyin Deng – Microbial Pathogenesis

Integrated metagenomic and metabolomic analysis reveals distinctive stage-specific gut-microbiome-derived metabolites in intracranial aneurysms – Haitao Sun – Gut

After surgically induced remission, ileal and colonic mucosa-associated microbiota predicts Crohn’s disease recurrence – Cristian-Hernandez Rocha – Clinical Gastroenterology and Hepatology

Human gut microbiota analysis of cystic fibrosis infants using metaproteomics – C García-Durán – Microbiology Resource Announcements

Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages – Shivkumar Vishnempet Shridhar – Cell Reports

Perturbations in gut microbiota composition in schizophrenia – YiMeng Wang – PloS One

Maternal gestational diabetes mellitus associates with altered gut microbiome composition and head circumference abnormalities in male offspring – Shilan Wang – Cell host & Microbe

Microbial signatures and continuum in endometrial cancer and benign patients – Anita Semertzidou – Microbiome

Comparison of shipping versus immediate freezer storage of vaginal samples for vaginal microbiota assessment – Susan Tuddenham – Sexually Transmitted Infections

Letter: Real-world bisphenol A exposure not linked to microbiota dynamics in childhood obesity – Robyn L Prueitt – mSystems

Essay: Blockbuster T cells in the gut: A high-resolution view of immune modulation by the gut microbiome is presented – Kazuki Nagashima – Science

Review: Gut microbiota-lncRNA/circRNA crosstalk: implications for different diseases – Lei Zhang – Critical Reviews in Microbiology

Review: The role of gut microbiota, exosomes, and their interaction in the pathogenesis of ALD – Zilu Cheng – Journal of Advanced Research

Review: Integrating host and microbiome biology using holo-omics – Carl M Kobel – Molecular Omics

Beneficial Microbes, Compounds, and Interventions

Overcoming donor variability and risks associated with fecal microbiota transplants through bacteriophage-mediated treatments – Torben Sølbeck Rasmussen – Microbiome

Fecal microbiota transplantation alters gut phage communities in a clinical trial for obesity – Michele Zuppi – Microbiome

A meta-analysis of randomized controlled trials evaluating the effectiveness of fecal microbiota transplantation for patients with irritable bowel syndrome – Yu Wang – BMC Gastroenterology

Faecalibaterium prausnitzii strain EXL01 boosts efficacy of immune checkpoint inhibitors – Marius Bredon – Oncoimmunology

Serum and CSF metabolomics analysis shows Mediterranean Ketogenic Diet mitigates risk factors of Alzheimer’s disease – Annalise Schweickart – NPJ Metabolic Health and Disease

Oral histidine affects gut microbiota and MAIT cells improving glycemic control in type 2 diabetes patients – Moritz V Warmbrunn – Gut Microbes

The Evolution of Science and Regulation of Dietary Supplements: Past, Present, and Future – Paul M Coates – The Journal of Nutrition

Review: Dietary patterns interfere with gut microbiota to combat obesity – Xiaofan Lou – Frontiers in Nutrition

Plant Microbiome

Rhizobacterial syntrophy between a helper and a beneficiary promotes tomato plant health – Sang-Moo Lee – The ISME Journal

Review: Unearthing the power of microbes as plant microbiome for sustainable agriculture – Arpan Mukherjee – Microbiological Research

Review: Surviving the Stress: Understanding the Molecular Basis of Plant Adaptations and Uncovering the Role of Mycorrhizal Association in Plant Abiotic Stresses – Vivek Sharma – Microbial Pathogenesis

Environmental Microbiome

The drainome: longitudinal metagenomic characterisation of wastewater from hospital ward sinks to characterize the microbiome and resistome and assess the effects of decontamination interventions – Luke B Snell – The Journal of Hospital Infection

Review: Beyond Meta-Omics: Functional Genomics in Future Marine Microbiome Research – Yin Chen – Annual Review of Marine Science

Review: Soil Metaproteomics for Microbial Community Profiling: Methodologies and Challenges – Haixia Pan – Current Microbiology

Forensic Microbiome

16S rRNA, metagenomics and 2bRAD-M sequencing to decode human thanatomicrobiome – Xin Huang – Scientific Data

Microbiome Analysis

A graph neural network approach for predicting drug susceptibility in the human microbiome – Maryam – Computers in Biology and Medicine

Protocol for the construction and functional profiling of metagenome-assembled genomes for microbiome analyses – Goutam Banerjee – STAR Protocols

DeepPIG: deep neural network architecture with pairwise connected layers and stochastic gates using knockoff frameworks for feature selection – Euiyoung Oh – Scientific Reports

CViewer: a Java-based statistical framework for integration of shotgun metagenomics with other omics datasets – Orges Koci – Microbiome