Human and General Microbiome

Preservation of conjugated primary bile acids by oxygenation of the small intestinal microbiota in vitro – Jenni Firrman – mBio

HIV rebound in HIV controllers is associated with a specific fecal microbiome profile – Yanhui Cai – European Journal of Immunology

Comparative analysis of the tumor microbiome, molecular profiles, and immune cell abundances by HPV status in mucosal head and neck cancers and their impact on survival – Rituraj Upadhyay – Cancer Biology & Therapy

Metatranscriptome and resistome of the endodontic microbiome – Ericka T Pinheiro – Journal of Endodontics

Microbiome of periodontitis and peri-implantitis before and after therapy: Long-read 16S rRNA gene amplicon sequencing – Pei-Shiuan Yu – Journal of Periodontal Research

Review: Akkermansia muciniphila: a deworming partner independent of type 2 immunity – Jiaqi Wang – Gut Microbes

Review: The gut microbiome in alcohol use disorder and alcohol-associated liver disease: A systematic review of clinical studies – Erica N Grodin – Alcohol, Clinical & Experimental Research

Review: Bile acid-microbiota crosstalk in hepatitis B virus infection – Jiaxin Wang – Journal of Gastroenterology and Hepatology

Review: Ecological insights into hematopoiesis regulation: unraveling the influence of gut microbiota – Kaiwen Zheng – Gut Microbes

Review: Interactions between host and gut microbiota in gestational diabetes mellitus and their impacts on offspring – Shuxian Wang – BMC Microbiology

Beneficial Microbes and Compounds

Review: Mechanisms of microbiota modulation: Implications for health, disease, and therapeutic interventions – Okechukwu Paul-Chima Ugwu – Medicine

Lactobacillus paracasei Jlus66 relieves DSS-induced ulcerative colitis in a murine model by maintaining intestinal barrier integrity, inhibiting inflammation, and improving intestinal microbiota structure – Fazheng Yu – European Journal of Nutrition

Conjugated linoleic acid metabolite impact in colorectal cancer: a potential microbiome-based precision nutrition approach – Adriana González – Nutrition Reviews

Microbiome in Animal Models

Aging amplifies a gut microbiota immunogenic signature linked to heightened inflammation – Maria Elisa Caetano-Silva – Aging Cell

Bacteroidota inhibit microglia clearance of amyloid-beta and promote plaque deposition in Alzheimer’s disease mouse models – Caroline Wasén – Nature Communications

Prevotella copri promotes vascular calcification via lipopolysaccharide through activation of NF-κB signaling pathway – Qing-Yun Hao – Gut Microbes

Non-Model Animal Microbiome

Temporal dynamics of fecal microbiota community succession in broiler chickens, calves, and piglets under aerobic exposure – Paul Oladele – Microbiology Spectrum

Characterizing the blood microbiota in healthy and febrile domestic cats via 16s rRNA sequencing – Liam Kitson – Scientific Reports

Plant/Rhizosphere Microbiome

Metagenomic sequencing and reconstruction of 82 microbial genomes from barley seed communities – Kalonji A Tshisekedi – Scientific Data

Modulation of rhizosphere microbial community and metabolites by bio-functionalized nanoscale silicon oxide alleviates cadmium-induced phytotoxicity in bayberry plants – Temoor Ahmed – The Science of the Total Environment

Phyllosphere fungal diversity generates pervasive nonadditive effects on plant performance – Brianna K Almeida – The New Phytologist

Environmental Microbiome

Deciphering the functional and structural complexity of the Solar Lake flat mat microbial benthic communities – Rehab Z Abdallah – mSystems

Microbiome processing of organic nitrogen input supports growth and cyanotoxin production of Microcystis aeruginosa cultures – Wei Li – The ISME Journal

Genomic fingerprints of the world’s soil ecosystems – Emily B Graham – mSystems

Review: Insights into cyanobacterial blooms through the lens of omics – Ve Van Le – The Science of the Total Environment

Microbiome Analysis

fastCCLasso: a fast and efficient algorithm for estimating correlation matrix from compositional data – Shen Zhang – Bioinformatics

Review: A Standard Pipeline for Analyzing the Endometrial Microbiome – Mychelle de Medeiros Garcia Torres – Reproductive Sciences