Human Gut Microbiome

Altered Gut Microbiota and Short-chain Fatty Acids in Chinese Children with Constipated Autism Spectrum Disorder – Jianquan He – Scientific Reports

Clostridium butyricum and Clostridium tyrobutyricum: angel or devil for necrotizing enterocolitis? – Ruizhi Tao – mSystems

Gut microbiota composition and diversity before, during, and two months after rifamycin-based tuberculosis preventive therapy – Marie Nancy Séraphin – Scientific Reports

Genomic analyses of Bacteroides fragilis: subdivisions I and II represent distinct species – Jamie English – Journal of Medical Microbiology

Bacterial SNPs in the human gut microbiome associate with host BMI – Liron Zahavi – Nature Medicine

Fecal short-chain fatty acids in non-constipated irritable bowel syndrome: a potential clinically relevant stratification factor based on catabotyping analysis – Giorgio Gargari – Gut Microbes

Characterizing alterations in the gut microbiota following postpartum weight change – Bridget N Chalifour – mSystems

Core-genome multilocus sequence typing and core-SNP analysis of Clostridium neonatale strains isolated in different spatio-temporal settings – Victoria Mesa – Microbiology Spectrum

Human Microbiome (outside the gut)

Identification of root canal microbiota profiles of periapical tissue diseases using matrix-assisted laser desorption/ionization time-of-flight mass spectrometer – Mete Ahlat – Anaerobe

Gardnerella pickettii sp. nov. (formerly Gardnerella genomic species 3) and Gardnerella greenwoodii sp. nov. (formerly Gardnerella genomic species 8) isolated from female urinary microbiome – Márcia Sousa – International Journal of Systematic and Evolutionary Microbiology

Smoking and salivary microbiota: a cross-sectional analysis of an Italian alpine population – Giacomo Antonello – Scientific Reports

Prolonged mask wearing changed nasal microbial characterization of young adults during the COVID-19 pandemic in Shanghai, China – Guoxiu Xiang – Frontiers in Immunology

Beneficial Microbes, Compounds and Interventions

Inulin-enriched Megamonas funiformis ameliorates metabolic dysfunction-associated fatty liver disease by producing propionic acid – Xinyue Yang – NPJ Biofilms and Microbiomes

A gut microbial metabolite of linoleic acid ameliorates liver fibrosis by inhibiting TGF-β signaling in hepatic stellate cells – Nanaho Kasahara – Scientific Reports

Fecal microbiota transplantation promotes reduction of antimicrobial resistance by strain replacement – Michael H Woodworth – Science Translational Medicine

Animal Microbiome

Revealing the developmental characterization of rumen microbiome and its host in newly received cattle during receiving period contributes to formulating precise nutritional strategies – Yanjiao Li – Microbiome

Shifts in the coral microbiome in response to in situ experimental deoxygenation – Rachel D Howard – Applied and Environmental Microbiology

Limitation of amino acid availability by bacterial populations during enhanced colitis in IBD mouse model – Tanner G Richie – mSystems

Estradiol mediates colonic epithelial protection in aged mice after stroke and is associated with shifts in the gut microbiome – Juneyoung Lee – Gut Microbes

Functional potential and evolutionary response to long-term heat selection of bacterial associates of coral photosymbionts – Justin Maire – mSystems

Gut bacteria mediated adaptation of diamondback moth, Plutella xylostella, to secondary metabolites of host plants – Xiaofeng Xia – mSystems

Environmental Microbiome

Microbial hitchhikers harbouring antimicrobial-resistance genes in the riverine plastisphere – Vinko Zadjelovic – Microbiome

Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia – Coco Koedooder – mSystems

Review: Microbial ecology of drinking water from source to tap – Leili Abkar – The Science of the Total Environment

Microbiome Analysis: Tools, Techniques and Resources

Food4healthKG: Knowledge graphs for food recommendations based on gut microbiota and mental health – Chengcheng Fu – Artificial Intelligence in Medicine

Testing latent classes in gut microbiome data using generalized Poisson regression models – Xinhui Qiao – Statistics in Medicine