Have a nice Tuesday! Today, in this Digest we have several papers about the microbiome and respiratory health.  We have also papers about the detection of archaeal species in caries biofilm, microbiome and cancer, and microbiome changes by the use of fish oil and their effect on (TMAO)-exacerbated atherogenesis. And of course, more papers… 

 

Human and General Microbiome

Minireview: The Microbiome, Malignant Fungating Wounds, and Palliative Care – Mridula Vardhan – Frontiers in Cellular and Infection Microbiology

Gut microbiota: from the forgotten organ to a potential key player in the pathology of Alzheimer disease – Dong-oh Seo – The Journals of Gerontology

Presence of Archaea in dental caries biofilms – Naile Dame-Teixeira – Archives of Oral Biology

Increased Moraxella and Streptococcus following severe bronchiolitis is associated with recurrent wheezing – Jonathan M. Mansbach  – Journal of Allergy and Clinical Immunology

Composition and Diversity of Bacterial Community on the Ocular Surface of Patients With Meibomian Gland Dysfunction – Xiaojin Dong – Investigative Ophthalmology & Visual Science 

Diversity of endocervical microbiota associated with genital Chlamydia trachomatis infection and infertility among women visiting obstetrics and gynecology clinics in Malaysia – Heng Choon Cheong – Plos One

Competition Among Gardnerella Subgroups From the Human Vaginal Microbiome – Salahuddin Khan – Frontiers in Cellular and Infection Microbiology

Review: Potential clinical utility of multiple target quantitative polymerase chain reaction (qPCR) array to detect microbial pathogens in patients with chronic obstructive pulmonary disease (COPD) – Hannah E. O’Farrell – Journal of Thoracic Disease 

Review: COPD and the gut-lung axis: the therapeutic potential of fibre – Annalicia Vaughan – Journal of Thoracic Disease 

Review: Chronic obstructive pulmonary disease (COPD) and lung cancer: common pathways for pathogenesis – Brielle A. Parris – Journal of Thoracic Disease 

The Vaginal Community State Types Microbiome-Immune Network as Key Factor for Bacterial Vaginosis and Aerobic Vaginitis – Francesco De Seta – Frontiers in Microbiology

Gut Microbiota in Bipolar Depression and Its Relationship to Brain Function: An Advanced Exploration – Qiaoqiao Lu – Frontiers in Psychiatry

Fish oil is more potent than flaxseed oil in modulating gut microbiota and reducing trimethylamine-N-oxide (TMAO)-exacerbated atherogenesis – Zouyan He – Journal of Agricultural and Food Chemistry 

Characterization of gut microbiota in children with pulmonary tuberculosis – Weiran Li – BMC Pediatrics

Editorial: Bugs, Drugs, and Shrugs – James T. Rosenbaum – Arthritis and Rheumatology

Opinion: Harnessing the Microbiome for Pancreatic Cancer Immunotherapy – Gerardo A. Vitiello – Trends in Cancer

 

Animal Microbiome / Animal Experiments

Review: Maternal imprinting of the neonatal microbiota colonization in intrauterine growth restricted piglets: a review – Lili Jiang – Journal of Animal Science and Biotechnology

Colonization of the gut microbiota of honey bee (Apis mellifera) workers at different developmental stages – Xiang Dong – Microbiological Research 

Effects of oral exposure to titanium dioxide nanoparticles on gut microbiota and gut-associated metabolism in vivo – Zhangjian Chen – Nanoscale

Sex, Age, and Bacteria: How the Intestinal Microbiota Is Modulated in a Protandrous Hermaphrodite Fish – M. Carla Piazzon – Frontiers in Microbiology

Dynamic Changes in the Microbiome and Mucosal Immune Microenvironment of the Lower Respiratory Tract by Influenza Virus Infection – Liming Gu – Frontiers in Microbiology

Fuzhuan brick tea attenuates high-fat diet-induced obesity and associated metabolic disorders by shaping gut microbiota – Dongmin Liu – Journal of Agricultural and Food Chemistry 

 

Plant Microbiome

Rapid Detection of Xanthomonas citri pv. fuscans and Xanthomonas phaseoli pv. phaseoli in Common Bean by Loop-Mediated Isothermal Amplification – Bruna Alicia Rafael de Paiva – Plant Disease

Beneficial Plant Microorganisms Affect the Endophytic Bacterial Communities of Durum Wheat Roots as Detected by Different Molecular Approaches – Monica Agnolucci –  Frontiers in Microbiology

 

Methods

Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations – Doratha A. Byrd – Plos One

 

Bioinformatics

Link-HD: a versatile framework to explore and integrate heterogeneous microbial communities – Laura M Zingaretti – Bioinformatics

 

Other papers

Antibiotic exposure and risk of Parkinson’s disease in finland: A nationwide case-control study – Tuomas H. Mertsalmi – Movement Disorders