Human and General Microbiome

Paternal microbiome perturbations impact offspring fitness – Ayele Argaw-Denboba – Nature

Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes – Chen Liao – Nature Microbiology

Human gut microbiota and their production of endocannabinoid-like mediators are directly affected by a dietary oil – Charlène Roussel – Gut Microbes

Leveraging genomic signatures of oral microbiome-associated antibiotic resistance genes for diagnosing pancreatic cancer – Xiaojing Shen – PloS ONE

Deciphering the Pancreatic Cancer Microbiome in Mainland China: Impact of Exiguobacterium/Bacillus ratio on Tumor Progression and Prognostic Significance – Zhengyan Zhang – Pharmacological Research

Emergent antibiotic persistence in a spatially structured synthetic microbial mutualism – Xianyi Xiong – The ISME Journal

Microplastics and microbiota: Unraveling the hidden environmental challenge – Jean Demarquoy – World Journal of Gastroenterology

Genome plasticity shapes the ecology and evolution of Phocaeicola dorei and Phocaeicola vulgatus – Emilene Da Silva Morais – Scientific Reports

Review: A catalog of ethanol-producing microbes in humans – Babacar Mbaye – Future Microbiology

Review: Direct metagenomics investigation of non-surgical hard-to-heal wounds: a review – Madjid Morsli – Annals of Clinical Microbiology and Antimicrobials

Beneficial Microbes

A consortium of Hordeum vulgare and gut microbiota against non-alcoholic fatty liver disease via data-driven analysis – Su-Been Lee – Artificial Cells, Nanomedicine, and Biotechnology

Animal Microbiome

Amphibian tolerance to arsenic: microbiome-mediated insights – Isabella Ferreira Cordeiro – Scientific Reports

Combined effect of seasons and life history in an anuran strengthens the response and relationship between their physiology and gut microbiota – Jun-Kyu Park – Scientific Reports

Gut microbiome and resistome characterization of pigs treated with commonly used post-weaning diarrhea treatments – Judith Guitart-Matas – Animal Microbiome

Effects of microbiome transplants on fly microbiome – Jorge Ferreira – Lab Animal

Multi-omics reveal the gut microbiota-mediated severe foraging environment adaption of small wild ruminants in the Three-River-Source National Park, China – Hongjin Liu – Integrative Zoology

Sea cucumber (Holothuria glaberrima) intestinal microbiome dataset from Puerto Rico, generated by shotgun sequencing – Edwin Omar Rivera-Lopez – Data in Brief

Plant Microbiome

Depletion of protective microbiota promotes the incidence of fruit disease – Xue Luo – The ISME Journal

Analysis of Salt Stress on Soil Microbial Community Composition and Its Correlation with Active Components in the Rhizosphere of Acanthopanax senticosus – Wenhui Yuan – Current Microbiology

Environmental Microbiome

Mechanisms and implications of bacterial-fungal competition for soil resources – Chaoqun Wang – The ISME Journal

Potential coupling of microbial methane, nitrogen, and sulphur cycling in the Okinawa Trough cold seep sediments – Ye Chen – Microbiology Spectrum

Microbiome Analysis

mbDecoda: a debiased approach to compositional data analysis for microbiome surveys – Yuxuan Zong – Briefings in Bioinformatics

EnsembleSeq: a workflow towards real-time, rapid, and simultaneous multi-kingdom-amplicon sequencing for holistic and resource-effective microbiome research at scale – Sunil Nagpal – Microbiology Spectrum

mi-Mic: a novel multi-layer statistical test for microbiota-disease associations – Oshrit Shtossel – Genome Biology

Review: Unveiling microbial diversity: harnessing long-read sequencing technology – Daniel P Agustinho – Nature Methods