November 12, 2019

Have a nice day! Today we have reviews about the “hologenome” concept, the influence of stress on IBD flares in children and adults and microbiome and liver disease. In addition, we have articles about the effect of UV light on skin microbiota, alligator microbiome, and more!


Human and General Microbiome

Perspective: The concept of the hologenome, an epigenetic phenomenon, challenges aspects of the modern evolutionary synthesis – Adena Collens – Molecular and Developmental Evolution

Review: Stress Triggers Flare of Inflammatory Bowel Disease in Children and Adults – Yue Sun – Frontiers in Pediatrics

Review: Current US Food and Drug Administration-Approved Pharmacologic Therapies for the Treatment of Irritable Bowel Syndrome with Diarrhea – Darren M. Brenner – Advances in Therapy

Review: Microbiome Modulation in Liver Disease – Eamonn M.M. Quigley – Clinical Liver Disease

Viewpoint: How the joint study of the microbiota and metabolites in different body fluids may aid in the identification of novel disease mechanisms – Jordi Mayneris‐Perxachs – The FEBS Journal

Microbial Metabolite Signaling Is Required for Systemic Iron Homeostasis – Nupur K. Das – Cell Metabolism

Characteristics of Gut Microbiota in Patients With Rheumatoid Arthritis in Shanghai, China – Yang Sun – Frontiers in Cellular and Infection Microbiology

Using compositional principal component analysis to describe children’s gut microbiota in relation to diet and body composition – Claudia Leong – The American Journal of Clinical Nutrition

Skin Exposure to Narrow Band Ultraviolet (UVB) Light Modulates the Human Intestinal Microbiome – Else S. Bosman – Frontiers in Microbiology

The Therapeutic Effect of 1,8-Cineol on Pathogenic Bacteria Species Present in Chronic Rhinosinusitis – Matthias Schürmann – Frontiers in Microbiology

Potential correlation between dietary fiber suppresses microbial conversion of choline to trimethylamine and formation of methylglyoxal – Qian Li – Journal of Agricultural and Food Chemistry


Animal Microbiome

Host-associated microbiomes drive structure and function of marine ecosystems – Laetitia G. E. Wilkins – PLoS Biology

Intake of Watermelon or Its Byproducts Alters Glucose Metabolism, the Microbiome, and Hepatic Proinflammatory Metabolites in High-Fat-Fed Male C57BL/6 J Mice – Alexandra R Becraft – The Journal of Nutrition

Mixed mode bacterial transmission in the common brooding coral Pocillopora acuta – Katarina Damjanovic – Environmental Microbiology

The Effect of Milk Replacer Composition on the Intestinal Microbiota of Pre-ruminant Dairy Calves – James Badman – Frontiers in Veterinary Sciences

Metagenomics Reveals Seasonal Functional Adaptation of the Gut Microbiome to Host Feeding and Fasting in the Chinese Alligator – Ke-Yi Tang – Frontiers in Microbiology

A Short-Term Feeding of Dietary Casein Increases Abundance of Lactococcus lactis and Upregulates Gene Expression Involving Obesity Prevention in Cecum of Young Rats Compared With Dietary Chicken Protein – Fan Zhao – Frontiers in Microbiology

Microbiota assessment across different developmental stages of Dermacentor silvarum (Acari: Ixodidae) revealed stage-specific signatures – Zhang Ruiling – Ticks and Tick-borne Diseases


Food Microbiome

Tracking bacteriome variation over time in Listeria monocytogenes-positive foci in food industry – Pedro Rodríguez-López – International Journal of Food Microbiology


Environmental Microbiome

Response mechanism of microbial community to the environmental stress caused by the different mercury concentration in soils – Lei Wang – Ecotoxicology and Environmental Safety


Other papers

The Bacterial Communities of Little Cigars and Cigarillos Are Dynamic Over Time and Varying Storage Conditions – Eoghan M. Smyth – Frontiers in Microbiology 


Methods and Techniques

Review: A Bioinformatics Guide to Plant Microbiome Analysis – Rares Lucaciu – Frontiers in Plant Sciences

Drug Discovery and Repurposing Inhibits a Major Gut Pathogen-Derived Oncogenic Toxin – Paul Metz – Frontiers in Cellular and Infection Microbiology

Developing a Reproducible Microbiome Data Analysis Pipeline Using the Amazon Web Services Cloud for a Cancer Research Group: Proof-of-Concept Study – Jinbing Bai – JMIR Medical Informatics

Rapid sequencing-based diagnosis of infectious bacterial species from meningitis patients in Zambia – So Nakagawa – Clinical and Translational Immunology 

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