November 18, 2018

Do your eyes have microbiomes? How does heavy rain influence the Atacama desert microbiome?  Welcome to the microbiome digest. This weekends articles also include the latest research on space-station microbes, the influence of protists on the rhizosphere, techniques in metabolome/microbiome research and more! Enjoy!

General microbiome

Identifying and Predicting Novelty in Microbiome Studies – Xiaoquan Su – mBio

Pregnancy and early life

Impacts of diet and exercise on maternal gut microbiota are transferred to offspring – Shyam Prakaash Bhagavata Srinivasan – Frontiers in Endocrinology

Multi-site human microbiome

Biogeography of the human ocular microbiota – JeromeOzkan – The Ocular Surface

Review: The Human Microbiota and Asthma – Aaron Ver Heul – Clinical Reviews in Allergy & Immunology

Human gut microbiome

Gastroduodenal “Dysbiosis”: a New Clinical Entity – Ayesha Shah – Current Treatment Options in Gastroenterology

Animal experiments

Preprint: Colonization of the tsetse fly midgut with commensal Enterobacter inhibits trypanosome infection establishment – Brian L Weiss – bioRiv

Animal microbiome

Association of bovine major histocompatibility complex (BoLA) gene polymorphism with colostrum and milk microbiota of dairy cows during the first week of lactation – Hooman Derakhshani – Microbiome

Plant, root, and soil microbiome

Protists: Puppet Masters of the Rhizosphere Microbiome – ZhileiGao – Trends in Plant Science

Characterization of microbes and denitrifiers attached to two species of floating plants in the wetlands of Lake Taihu – Bing Han – PLOS ONE

Environmental and spatial variables determine the taxonomic but not functional structure patterns of microbial communities in alpine grasslands – Xiao-BoWang – Science of The Total Environment

With or without trees: Resistance and resilience of soil microbial communities to drought and heat stress in a Mediterranean agroforestry system – EstherGuillot – Soil Biology and Biochemistry

Response of microbial communities and enzyme activities to amendments in saline-alkaline soils – ShaohuaShi – Applied Soil Ecology

The effect of moisture on soil microbial properties and nitrogen cyclers in Mediterranean sweet orange orchards under organic and inorganic fertilization – AliciaMorugán-Coronado – Science of The Total Environment

Water and extremophile microbiome

Succession and persistence of microbial communities and antimicrobial resistance genes associated with International Space Station environmental surfaces – Nitin Kumar Singh – Microbiome

Unprecedented rains decimate surface microbial communities in the hyperarid core of the Atacama Desert – A. Azua-Bustos – Scientific Reports

Exposure to tetracycline perturbs the microbiome of soil oligochaete Enchytraeus crypticus – JunMa – Science of The Total Environment

Preprint: Filamentation of Vibrio cholerae is an adaptation for surface attachment and biofilm architecture – Benjamin R Wucher – bioRxiv

Designing an in situ remediation strategy for polluted surface water bodies through the specific regulation of microbial community – Boran Wu – Frontiers of Environmental Science & Engineering

Food microbiology

Microbiome of drinking water: A full-scale spatio-temporal study to monitor water quality in the Paris distribution system – YoannPerrin – Water Research

Techniques

Mass Spectrometry-Based Microbial Metabolomics: Techniques, Analysis, and Applications – Edward E. K. Baidoo – Microbial Metabolomics

High-Throughput Solid-Phase Microextraction–Liquid Chromatography–Mass Spectrometry for Microbial Untargeted Metabolomics – Fatemeh Mousavi – Microbial Metabolomics

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