Events
Translational Microbiome Conference, April 20-21, Boston MA
Guggenheim Securities Microbiome Day, April 21, New York. I cannot find a website for the conference, but got several links to press releases from companies that will participate, such as Enterome and Evelo Biosciences
General microbiome
Intricacies of assessing the human microbiome in epidemiological studies – Courtney K. Robinson – Annals of Epidemiology
Pregnancy and birth
Secretory IgA in the Coordination of Establishment and Maintenance of the Microbiota – Oliver Pabst – Trends in Immunology
Human skin microbiome
The microbiological signature of human cutaneous leishmaniasis lesions exhibits restricted bacterial diversity compared to healthy skin – Vanessa R Salgado – Memórias do Instituto Oswaldo Cruz
Human respiratory microbiome
Conference abstract: Analysis of the Sputum Microbiome in the Severe Asthma – Rihuang Qiu – Chest Journal
Human gut microbiome
(also contains animal experiments): Helminth infection promotes colonization resistance via type 2 immunity – Deepshika Ramanan – Science
Assessing the Colonic Microbiota in Children: Effects of Sample Site and Bowel Preparation – Shaw, Alexander G. – Journal of Pediatric Gastroenterology & Nutrition
Editorial: further evidence that proton pump inhibitors may impact on the gut microbiota – A. W. Walker – Alimentary Pharmacology & Therapeutics
Couple of papers from the Didier Raoult lab in New Microbes and New Infections (half of the next issue of that journal is by people from his group)
Isolation of a new species Peptoniphilus phoceensis from the human gut – Gaël Mourembou
Romboutsia timonensis, a new Species isolated from human Gut – Davide Ricaboni
« Bariatricus massiliensis », as a new bacterial species from the human gut microbiota – Simon Bessis
Review: Adaptation of Candida albicans to commensalism in the gut – Daniel Prieto – Future Microbiology
Review: Potential Role of the Microbiome in Barrett’s Esophagus and Esophageal Adenocarcinoma – Erik J. Snider – Digestive Diseases and Sciences
Review: Gut barrier structure, mucosal immunity and intestinal microbiota in the pathogenesis and treatment of HIV infection – Camilla Tincati – AIDS Research and Therapy
Review: Gut microbiota, inflammation and colorectal cancer – Jun Sun – Genes & Diseases
Review: Age-mediated changes in the gastrointestinal tract – Hamid A. Merchant – International Journal of Pharmaceutics
Review: Current Understanding of Dysbiosis in Disease in Human and Animal Models – DeGruttola, Arianna K. – Inflammatory Bowel Diseases
Animal models
Resilience of the intestinal microbiota following pathogenic bacterial infection is independent of innate immunity mediated by NOD1 or NOD2 – Susan J. Robertson – Microbes and Infection
Changes of Mouse Gut Microbiota Diversity and Composition by Modulating Dietary Protein and Carbohydrate Contents: A Pilot Study – Eunjung Kim – Preventive Nutrition and Food Science
Chemopreventive Metabolites Are Correlated with a Change in Intestinal Microbiota Measured in A-T Mice and Decreased Carcinogenesis – Amrita K. Cheema – PLOS ONE
Animal microbiome
Analysis of the rumen bacteria and methanogenic archaea of yak (Bos grunniens) steers grazing on the Qinghai-Tibetan Plateau – Dan Xue – Livestock Science
Evolution of the nasopharyngeal microbiota of beef cattle from weaning to 40 days after arrival at a feedlot – Edouard Timsit – Veterinary Microbiology
The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels – Han Liu – Scientific Reports
Plant, root, and soil microbiome
Multiple effects of a commercial Roundup® formulation on the soil filamentous fungus Aspergillus nidulans at low doses: evidence of an unexpected impact on energetic metabolism – Valérie Nicolas – Environmental Science and Pollution Research
Environmental Filtering Process Has More Important Roles than Dispersal Limitation in Shaping Large-Scale Prokaryotic Beta Diversity Patterns of Grassland Soils – Peng Cao – Microbial Ecology
Rhizosphere of Avicennia marina (Forsk.) Vierh. as a landmark for polythene degrading bacteria – Mohd. Shahnawaz – Environmental Science and Pollution Research
Wastewater microbiology
Mussel biofiltration effects on attached bacteria and unicellular eukaryotes in fish-rearing seawater – Eleni Voudanta – PeerJ
Characterization of microbial communities in wetland mesocosms receiving caffeine-enriched wastewater – Dongqing Zhang – Environmental Science and Pollution Research
Food microbiology
Bacterial community analysis of Tatsoi cultivated by hydroponics – Ok K. Koo – Journal of Environmental Science and Health, Part B
Heterofermentative lactic acid bacteria dominate in Korean commercial kimchi – Hee-Young Kim – Food Science and Biotechnology
Spatial Distribution of the Metabolically Active Microbiota within Italian PDO Ewes’ Milk Cheeses – Ilaria De Pasquale – PLOS ONE
Effect of postharvest practices on the culturable filamentous fungi and yeast microbiota associated with the pear carpoplane – Quinton Volschenk – Postharvest Biology and Technology
Review: Control of ochratoxin A-producing fungi in grape berry by microbial antagonists: A review – Hongyin Zhang – Trends in Food Science & Technology
More microbiology
Implementing an Antibiotic Stewardship Program: Guidelines by the Infectious Diseases Society of America and the Society for Healthcare Epidemiology of America – Tamar F. Barlam – Clinical Infectious Diseases
Zero-inflated negative binomial mixed model: an application to two microbial organisms important in oesophagitis – R. Fang – Epidemiology and Infection
http://journals.cambridge.org/action/displayAbstract?
Density-Dependent Differentiation of Bacteria in Spatially Structured Open Systems – Jan Ribbe – Biophysical Journal
Opinion: Harnessing the Power of Defensive Microbes: Evolutionary Implications in Nature and Disease Control – Suzanne A. Ford – PLOS Pathogens
Review: Directed evolution and synthetic biology applications to microbial systems – Marcelo C Bassalo – Current Opinion in Biotechnology
Microbes in the news
Gut bacteria could help prevent cancer – Science Daily
AmpliPhi Bio’s bacteriophage cocktail shows encouraging infection-fighting prowess in cystic fibrosis isolates; shares up 13% – Seeking Alpha
What do you want to know about your microbiome? uBiome opens poll on which of 6 top projects should win $100K in research help – Beth Mole – Ars Technica
Worm Infection Counters Inflammatory Bowel Disease by Drastically Changing Gut Microbiome – PR Newswire
The Microbiome: What Is It and How Does It Affect You? – Marsha Nunley – PR web
Science, publishing, and career
Why our peer review system is a toothless watchdog – Ivan Oransky and Adam Marcus – STAT News
Don’t dismiss science fairs. Make them better – Patrick Skerrett – STAT News
Dutch push for a quantum leap in open access – Martin Enserink – Science