General microbiome

Conserved genetic basis for microbial colonization of the gut – Liu et al. – Cell

Human skin microbiome

Confounders of the skin microbiome and wound healing in burn patients – Pourali, Aali & Kamrava – Burns

Human vaginal microbiome

[PREPRINT]Temporal Dynamics of the Vaginal Microbiome and Host Immune Markers Before, During, and After Metronidazole Treatment for Bacterial Vaginosis – Williams et al. – bioRxiv

Human gut microbiome/mycobiome

Gut microbiome in patients with early-stage and late-stage endometriosis – Cai et al. – BMC Women’s Health

Effect, tolerability, and safety of exclusive palatable elemental diet in patients with intestinal microbial overgrowth – Rezaie et al. – Clinical Gastroenterology and Hepatology

[PREPRINT]Characterization of the gut mycobiome in patients with non-alcoholic fatty liver disease and correlations with serum metabolome – Zheng et al. – bioRxiv

[PREPRINT]Investigating microbiota differences across chronic pancreatitis, influenced by lifestyle and genetic determinants – Ahmed et al. – bioRxiv

Animal microbiome

Gut microbiota contributes to protection against porcine deltacoronavirus infection in piglets by modulating intestinal barrier and microbiome – Zhang et al. – Microbiome

Adaptive survival strategies of rumen microbiota with solid diet deficiency in early life cause epithelial mitochondrial dysfunction – Yu et al. – The ISME Journal

[PREPRINT]Longitudinal study of the udder microbiome of Norwegian red dairy cows using metataxonomic and shotgun metagenomic approaches: Insights into pathogen-driven microbial adaptation and succession – da Silva Duarte et al. – bioRxiv

[PREPRINT]Characterizing the Microbiome of ‘Sterile’ Organs in Experimental Mice – Xu et al. – bioRxiv

Water and extremophile microbiome (sea, rivers, lakes, glaciers, permafrost, high-salt)

Environmental drivers of the resistome across the Baltic Sea – Serrana et al. – Microbiome

Candidate Phyla Radiation (CPR) bacteria from hyperalkaline ecosystems provide novel insight into their symbiotic lifestyle and ecological implications – He et al. – Microbiome

Bioinformatics

Bayesian compositional generalized linear mixed models for disease prediction using microbiome data – Zhang et al. – BMC Bioinformatics

Techniques

[PREPRINT]Artificial soil systems: A tool for investigating microbial life strategy effects on substrate mineralization – Fujiwara, Makino & Hamamoto – bioRxiv