Good morning everyone!
Highlights of today’s microbiome digest include:
- A genome-wide association study showed an association between host genetic variants and the gut microbiome in the Chinese population.
- Association of sugar intake with the gut microbiome composition in the Malmö Offspring Study.
- Gut microbial changes in Holstein cows from birth to adulthood.
- Fecal microbiome and antimicrobial resistance profiles in healthy Australian foals.
- A new method for the detection of functional potential from metagenomic sequences.
Enjoy reading!
General microbiome
Review: Interactions among microbes, the immune system, and the circadian clock – John F. Brooks – Seminars in Immunopathology
https://link.springer.com/article/10.1007%2Fs00281-020-00820-1
Comment: Know Your Model: Microbiota & phenotypes – Michelle N. Perry – Lab Animal
https://www.nature.com/articles/s41684-020-00660-4
The wasted chewing gum bacteriome – Leila Satari – Scientific Reports
https://www.nature.com/articles/s41598-020-73913-4
A realism-based approach to an ontological representation of symbiotic interactions – Matthew Diller – BMC Medical Informatics and Decision Making
https://bmcmedinformdecismak.biomedcentral.com/articles/10.1186/s12911-020-01273-0
Review: Multi-omics tools for studying microbial biofilms: current perspectives and future directions – Chaminda J. Seneviratne – Critical Reviews in Microbiology
https://www.tandfonline.com/doi/abs/10.1080/1040841X.2020.1828817?journalCode=imby20
Review: Challenges & opportunities for phage-based in situ microbiome engineering in the gut – Peter J Voorhees
https://www.sciencedirect.com/science/article/abs/pii/S0168365920303503?via%3Dihub
Human gut microbiome
Review: Modulation of the Microbiome in Parkinson’s Disease: Diet, Drug, Stool Transplant, and Beyond – Ethan G. Brown – Neurotherapeutics
https://link.springer.com/article/10.1007%2Fs13311-020-00942-2
Review: Gut microbiome and anorexia nervosa: The relationship between microbiome and gut-brain interaction in the context of anorexia nervosa – J. Seitz – Nervenarzt
https://link.springer.com/article/10.1007%2Fs00115-020-01003-x
The interplay between host genetics and the gut microbiome reveals common and distinct microbiome features for complex human diseases – Fengzhe Xu – Microbiome
https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-020-00923-9
Gut microbiota composition in relation to intake of added sugar, sugar-sweetened beverages and artificially sweetened beverages in the Malmö Offspring Study – Stina Ramne – European Journal of Nutrition
https://link.springer.com/article/10.1007%2Fs00394-020-02392-0
Gut microbiome mediated epigenetic regulation of brain disorder and application of machine learning for multi-omics data analysis – Harpreet Kaur – Genome
https://cdnsciencepub.com/doi/10.1139/gen-2020-0136
Review: The Gut Microbiome and Bone Strength – Macy Castaneda – Current Osteoporosis Reports
https://link.springer.com/article/10.1007%2Fs11914-020-00627-x
Review: Effects of Antibiotic Treatment on Gut Microbiota and How to Overcome Its Negative Impacts on Human Health – Camila Fontoura Acosta Ribeiro
https://pubs.acs.org/doi/10.1021/acsinfecdis.0c00036
Mechanisms linking the human gut microbiome to prophylactic and treatment strategies for COVID-19 – Gemma E Walton- British Journal of Nutrition
Oral and respiratory microbiome
Toll like Receptor signalling by Prevotella histicola activates alternative NF-κB signalling in Cystic Fibrosis bronchial epithelial cells compared to P. aeruginosa – Anne Bertelsen – PloS One
https://pubmed.ncbi.nlm.nih.gov/33031374/
Vaginal microbiome
Effect of a Nonoptimal Cervicovaginal Microbiota and Psychosocial Stress on Recurrent Spontaneous Preterm Birth – Kristin D Gerson – American Journal of Perinatology
https://www.thieme-connect.de/products/ejournals/abstract/10.1055/s-0040-1717098
Animal microbiome / Animal experiments
Enteromorpha prolifera Diet Drives Intestinal Microbiome Composition in Siganus oramin – Yan Xu – Current Microbiology
https://link.springer.com/article/10.1007%2Fs00284-020-02218-6
High-Fat Proteins Drive Dynamic Changes in Gut Microbiota, Hepatic Metabolome, and Endotoxemia-TLR-4-NFκB-Mediated Inflammation in Mice – Muhammad Ijaz Ahmad – J. Agric. Food Chem
https://pubs.acs.org/doi/10.1021/acs.jafc.0c02570
Dynamic change of the gastrointestinal bacterial ecology in cows from birth to adulthood – Chun Y. Guo – Microbiology Open
https://onlinelibrary.wiley.com/doi/10.1002/mbo3.1119
Effects of seasonality and previous logging on faecal helminth-microbiota associations in wild lemurs – I. I. de Winter – Scientific Reports
https://www.nature.com/articles/s41598-020-73827-1
Effects of inulin and isomalto-oligosaccharide on diphenoxylate-induced constipation, gastrointestinal motility-related hormones, short-chain fatty acids, and the intestinal flora in rats – Junhong Lan – Food & Function
https://pubs.rsc.org/en/content/articlelanding/2020/FO/D0FO00865F
Probiotic-fermented blueberry juice prevents obesity and hyperglycemia in high fat diet-fed mice in association with modulating the gut microbiota – Hao Zhong – Food & Function
https://pubs.rsc.org/en/content/articlelanding/2020/FO/D0FO00334D
Faecal microbiota and antimicrobial resistance gene profiles of healthy foals – Yuhong Liu – Equine Veterinary Journal
https://beva.onlinelibrary.wiley.com/doi/10.1111/evj.13366
Sows affect their piglets’ faecal microbiota until fattening but not their Salmonella enterica shedding status – Guillaume Lariviere-Gauthier – Letters in Applied Microbiology
https://sfamjournals.onlinelibrary.wiley.com/doi/10.1111/lam.13406
Probiotics / prebiotics
Review: Current status of probiotics for prevention and management of gastrointestinal cancers – Abdul Arif Khan – Expert Opinion on Biological Therapy
https://www.tandfonline.com/doi/abs/10.1080/14712598.2021.1828858?journalCode=iebt20
Plant, root, and soil microbiome
Characterization of the Leaf Microbiome from Whole-Genome Sequencing Data of the 3000 Rice Genomes Project – Veronica Roman-Reyna – Rice
https://thericejournal.springeropen.com/articles/10.1186/s12284-020-00432-1
Air, water and extremophile microbiome
Review: Urbanisation reduces the abundance and diversity of airborne microbes – but what does that mean for our health? A systematic review – Emily J. Flies – Science of The Total Environment
https://www.sciencedirect.com/science/article/abs/pii/S0048969720338596
Impact of a synthetic fungicide (fosetyl-Al and propamocarb-hydrochloride) and a biopesticide (Clonostachys rosea) on soil bacterial, fungal, and protist communities – BertrandFournier – Science of The Total Environment
https://www.sciencedirect.com/science/article/abs/pii/S0048969720331557
Methods
RBUD: A New Functional Potential Analysis Approach for Whole Microbial Genome Shotgun Sequencing – Zhikai Xing – Microorganisms
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