May 18, 2020

Good morning everyone. Today’s microbiome digest is very short specifically the human gut microbiome section. I have included only one study in this section which shows no association of gut microbiome and fecal calprotectin levels with enteropathy in preterm infants. Additionally, I have covered several interesting reviews and research articles to explore the role of the gut microbiome in Type 1 diabetes and Hashimoto’s thyroiditis, ameliorates ulcerative colitis, aging process, regulation of energy metabolism and oxidative stress. I hope you will enjoy today’s feed.

General microbiome

Fungal communities and their association with nitrogen-fixing bacteria affect early decomposition of Norway spruce deadwood – María Gómez-Brandón – Scientific Reports

Review: Gut microbiota and metabolites in the pathogenesis of endocrine disease – Fenneman AC – Biochemical Society Transactions

Review: Role of the Phytochemical Compounds like Modulators on Gut Microbiota and Oxidative Stress – Yordan Martínez – Current Pharmaceutical Design

Human gut microbiome

Faecal calprotectin and gut microbiota do not predict enteropathy in very preterm infants – Florence Campeotto – Acta Paediatrica

Animal microbiome / Animal experiments

Lizhong decoction ameliorates ulcerative colitis in mice via modulating gut microbiota and its metabolites – Junfeng Zou – Applied microbial and cell physiology

Age-related compositional changes and correlations of gut microbiome, serum metabolome, and immune factor in rats – Xia Zhang – GeroScience

The Beneficial Effects of Lippia Citriodora Extract on Diet‐Induced Obesity in Mice are Associated with the Modulation in the Gut Microbiota Composition – Patricia Diez‐Echave – Molecular Nutrition and Food Research

The gut microbiota attenuates muscle wasting by regulating energy metabolism in chemotherapy-induced malnutrition rats – Haitao Chen – Cancer Chemotherapy and Pharmacology

Slc26a3 deletion alters pH‐microclimate, mucin biosynthesis, microbiome composition and increases Tnfα expression in murine colon – A. Kini – Acta Physiologica

Tibet plateau probiotic mitigates chromate toxicity in mice by alleviating oxidative stress in gut microbiota – Pengya Feng – Communications Biology

Antimicrobial peptide GH12 prevents dental caries by regulating dental plaque microbiota – Wentao Jiang – Microbial Ecology


Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets – Isabel F. Escapa – Microbiome

Review: Metaproteomics: A strategy to study the taxonomy and functionality of the gut microbiota – Yuqiu Wang – Journal of Proteomics

Microbes in news

DOE scientists identify microbial link in gut-memory connection

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