General microbiome
Perturbed human sub-networks by Fusobacterium nucleatum candidate virulence proteins – Andreas Zanzoni – Microbiome
Pregnancy and early life
Impact of intrapartum antimicrobial prophylaxis upon the intestinal microbiota and the prevalence of antibiotic resistance genes in vaginally delivered full-term neonates – Alicja Nogacka – Microbiome
Multi-site human microbiome
Probiotics protect mice from CoCrMo particles-induced osteolysis – Zhenheng Wang – International Journal of Nanomedicine
Human respiratory microbiome
The temporal dynamics of the tracheal microbiome in tracheostomised patients with and without lower respiratory infections – Marcos Pérez-Losada – PLoS One
Human skin microbiome
Review: Impact of nasopharyngeal microbiota on the development of respiratory tract diseases – S. Esposito – European Journal of Clinical Microbiology & Infectious Diseases
Human gut microbiome
Community characteristics of the gut microbiomes of competitive cyclists – Lauren M. Petersen – Microbiome
Bile microbiota in primary sclerosing cholangitis: Impact on disease progression and development of biliary dysplasia – Pedro Pereira – PLoS One
Assessment of therapeutic response in Crohn’s disease using quantitative dynamic contrast enhanced MRI (DCE-MRI) parameters: A preliminary study – Jianguo Zhu – Medicine
Review: Bridging the Gap between Gut Microbial Dysbiosis and Cardiovascular Diseases – Kimberley Lau – Nutrients
Animal experiments
Statin therapy causes gut dysbiosis in mice through a PXR-dependent mechanism – Jose A. Caparrós-Martín – Microbiome
The Microbiome Activates CD4 T-cell-mediated Immunity to Compensate for Increased Intestinal Permeability – Karen L.Edelblum – Cellular and Molecular Gastroenterology and Hepatology
Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice – Thomas J. Sharpton – bioRxiv
Transplanted human fecal microbiota enhanced Guillain Barré syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice – Phillip T. Brooks – Microbiome
Characterizing the gut (Gallus gallus) microbiota following the consumption of an iron biofortified Rwandan cream seeded carioca (Phaseolus Vulgaris L.) bean-based diet – Spenser Reed – PLoS One
Gut dysbiosis in mice genetically selected for low antibody production – Ana Carolina da Silva Santos – Gut Pathogens
Plant, root, and soil microbiome
Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome – Yunzeng Zhang – Microbiome
Water and extremophile microbiome
Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism – Elias Broman – Microbiome
Phages and viruses
Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples – Dagmara W. Lewandowska – Microbiome
HIV DNA-Adenovirus Multiclade Envelope Vaccine Induces Gp41 Antibody Immunodominance in Rhesus Macaques – Qifeng Han – Journal of Virology
Techniques
A method for measuring sulfide toxicity in the nematode Caenorhabditis elegans – Leonid Livshits – MethodsX
A novel plant-based-sea water culture media for in vitro cultivation and in situ recovery of the halophyte microbiome – Mohamed Y.Saleh – Journal of Advanced Research
Genomes
Whole genome of Klebsiella aerogenes PX01 isolated from San Jacinto River sediment west of Baytown, Texas reveals the presence of multiple antibiotic resistance determinants and mobile genetic elements – Rupa Iyer – Genomics Data
Description of ‘Arabia massiliensis’ gen. nov., sp. nov., ‘Gordonibacter massiliensis’ sp. nov., and ‘Bacilliculturomica massiliensis’ gen. nov., sp. nov., isolated from a faecal specimen of a 50-year-old Saudi Bedouin woman – S.I. Traore – New Microbes and New Infections
Science, publishing, and career
By now, you may have all heard of the Google Engineer fired over his criticism of diversity efforts. The full memo is here. My particular thoughts resonate with the Atlantic article below, because it reminds me of how important science communication is, and how quickly it devolves into black and white:
The Most Common Error in Media Coverage of the Google Memo – Conor Friedersdorf – The Atlantic