December 31, 2019

This is the last Microbiome Digest post from 2019! As part of the MD team, I want to say: Thank you very much for follow this blog. Have a great 2020, better than the 2019. The best for you! 

Cheers as well to Dr. Elies Bik (the MD founder) and all the other member of the MD team. -JPC

 

Human and General Microbiome

Review: Microbiota impacts on chronic inflammation and metabolic syndrome – related cognitive dysfunction – María Arnoriaga-Rodríguez – Reviews in Endocrine and Metabolic Disorders

Review: A Review of the Brain-Gut-Microbiome Axis and the Potential Role of Microbiota in Alzheimer’s Disease –  Sun, Miao – Journal of Alzheimer’s Disease

Meta-Analysis: The lacking effects of prebiotic products on decreasing adiposity parameters in overweight and obese individuals: a systematic review and meta-analysis – Hua Qu – Current Medicinal Chemistry

Review: Autoimmune Hepatitis-Immunologically Triggered Liver Pathogenesis-Diagnostic and Therapeutic Strategies – Elisabeth Suche – Journal of Immunology Research

Review: A Comprehensive Review and Update on the Pathogenesis of Inflammatory Bowel Disease – Qingdong Guan – Journal of Immunology Research

Review: Advances in Gut Microbiota of Viral Hepatitis Cirrhosis – Yixuan Wang – BioMed Research International

Review: Mechanisms of gastrointestinal microflora on drug metabolism in clinical practice – Chaonan Sun – Saudi Pharmaceutical Journal

Review: Gut microbiome and response to checkpoint inhibitors in non-small cell lung cancer-A review – Misako Nagasaka – Critical Reviews in Oncology/Hematology

Comparison of Japanese and Indian intestinal microbiota shows diet-dependent interaction between bacteria and fungi – Siddhika Pareek – npj Biofilms and Microbiomes 

Faecal Microbiota Transplantation for Recurrent Clostridioides difficile Infection: Experience with Lyophilized Oral Capsules – E. Reigadas – Journal of Hospital Infection

Vaginal microbiome diversity and preterm birth: results of a nested case-control study in Peru – Freida Blostein – Annals of Epidemiology

Disordered cutaneous microbiota in systemic lupus erythematosus – Cancan Huang – Journal of Autoimmunity

Transfer of skin microbiota between two dissimilar autologous microenvironments: A pilot study – Benji Perin  – PLoS ONE

 

Animal Microbiome

Alleviating chronic kidney disease progression through modulating the critical genus of gut microbiota in a cisplatin-induced Lanyu pig model – Ya-Jane Lee – Journal of Food and Drug Analysis

Microbiota changes in a pediatric acute lymphocytic leukemia mouse model – Yajing Song – MicrobiologyOpen

Impact of chronic exposure to trichlorfon on intestinal barrier, oxidative stress, inflammatory response and intestinal microbiome in common carp (Cyprinus carpio L.) – Xulu Changa – Environmental Pollution

Glucocorticoid and dietary effects on mucosal microbiota in canine inflammatory bowel disease – Todd Atherly – PLoS ONE

Effect of endometriosis on the fecal bacteriota composition of mice during the acute phase of lesion formation – Josefine Hantschel – PLoS ONE

Involvement of the gut microbiota and barrier function in glucocorticoid induced osteoporosis – Jonathan D Schepper – ASBMR

 

Food Microbiome

Exploring functional core bacteria in fermentation of a traditional Chinese food, Aspergillus-type douchi – Huilin Yang – PLoS ONE

High Throughput Sequencing Technologies as a New Toolbox for Deep Analysis, Characterization and Potentially Authentication of Protection Designation of Origin Cheeses? – Elena Kamilari – International Journal of Food Science 

 

Beneficial Microbes and Compounds

Blueberry Attenuates Liver Fibrosis, Protects Intestinal Epithelial Barrier, and Maintains Gut Microbiota Homeostasis – Zhiqiang Yan – Canadian Journal of Gastroenterology and Hepatology

Cortex Phellodendri extract’s anti-diarrhea effect in mice related to its modification of gut microbiota – Baoyang Xu – Biomedicine & Pharmacotherapy

 

Environmental and Water Microbiome

Tossed ‘good luck’ coins as vectors for anthropogenic pollution into aquatic environment – Alejandro Martínez – Environmental Pollution

Single molecule sequencing reveals response of manganese-oxidizing microbiome to different biofilter media in drinking water systems – Xin Zhao – Water Research

Enterococci Isolated from Trout in the Bukovec Water Reservoir and Čierny Váh River in Slovakia and Their Safety Aspect – Andrea Lauková – BioMed Research International

 

Bioinformatics / Databases

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species – Serena Manara – Genome Biology

Sufficient dimension reduction for compositional data – Diego Tomassi – Biostatistics

Cultivated Escherichia coli diversity in intestinal microbiota of Crohn’s disease patients and healthy individuals: Whole genome data – Maria Siniagina – Data in Brief

 

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