Today’s digest is full of exciting microbiome reviews and new techniques for analysing microbiome datasets.
Complete genome sequence of Bifidobacterium choerinum FMB-1, a resistant starch-degrading bacterium.Jung DH. Journal of Biotechnology
REVIEW: Nutritional Modulation of Innate Immunity: The Fat-Bile-Gut Connection.Chevre R. Trends in Endocrinology and Metabolism
Plant, Soil, and Water Microbiome
Combined polyhydroxyalkanoates (PHA) and 1,3-propanediol production from crude glycerol: Selective conversion of volatile fatty acids into PHA by mixed microbial consortia.Burniol-Figols A. Water Research
Below-ground-above-ground Plant-microbial Interactions: Focusing on Soybean, Rhizobacteria and Mycorrhizal Fungi. Igiehon NO. The Open Microbiology Journal
Animal Experiments and Microbiome
Effects of exogenous microbial inoculum on the structure and dynamics of bacterial communities in swine carcass composting. Yang X. Canadian Journal of Microbiology
Tick Microbiome Characterization by Next-Generation 16S rRNA Amplicon Sequencing.Couper L. Journal of Visualized Experiments
Effects of dietary lysozyme levels on growth performance, intestinal morphology, immunity response and microbiota community of growing pigs. Zou L. Journal of the Science of Food and Agriculture
REVIEW: A Review of the Effect of Management Practices on <i>Campylobacter</i> Prevalence in Poultry Farms.Sibanda N. Frontiers in Microbiology.
Metabolic Syndrome During Perinatal Period in Sows and the Link With Gut Microbiota and Metabolites. Cheng C. Frontiers in Microbiology
Fecal Microbiota Transplantation Ameliorates Experimentally Induced Colitis in Mice by Upregulating AhR. Wei YL. Frontiers in Microbiology
Prebiotics and Probiotics
Probiotic <i>Lactobacillus plantarum</i> Promotes Intestinal Barrier Function by Strengthening the Epithelium and Modulating Gut Microbiota. Wang J. Frontiers in Microbiology
Commentary: Uterine Microbiota: Residents, Tourists, or Invaders?Altmäe S. Frontier in Immunology.
Preservation of microbial DNA in marine sediments: Insights from extracellular DNA pools. Torti A. Environmental Microbiology
REVIEW: Hypothesis Testing and Statistical Analysis of Microbiome. Xia Y. Genes and Diseases